Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05230 ATGTGTGAATGTTTACAAGGATTTGAGCCAAAATCACCCCAGCAGTGGAATGCAATGGACTGGAGACAAGGATGTGTGCGCAGTGAACCGTGGAGTTGCAGAGTCAAAAACAAAGATGGTTTTCGAAGATTTGCTGGGATGAAAGTACCGAATACTACACATTCTTGGGTTAATGAAAATATGACACTGGAGGATTGCAAGGCCAAGTGCTTGGAAAATTGTTCATGCACAGGTTATGCAAAAACTGACCTGAGGGGAGAAGGTAGTGGCTGCGCCATCTGGTTCGGCGATCTTGTGGACTTGAGAGTTACACAAAGCAAACAAGATTTATATGTTCGAATGGCTGCTTCAGATATGGATGCTAAACATGGACATAAGAAAACGGTAGTTTTGGTGGTTCTAATTACAGTTTCATTGGTCCTTGTGATGCTATTGGCATTCTCCTACATTTACATGAGAAAAGGAAAGCACAGAGAGGAAATAGAGAAAACCATACCATCAGAAGATTTGGAGCTTCCATTCTTTGATCTTGCTACAATAGTTAATGCCACCAATAACTTCTCAATTAACAATAAGCTCGGTGAAGGTGGTTTTGGACCTGTATACAAGGGTACATTGTTGGACGGACGGGAGATTGCAGTCAAAAGGCTTTCAAGAAGTTCTGGCCAAGGATTGAATGAATTTAAGAATGAAGTTGTATTATGTGCCAAACTTCAACATCGGAATCTTGTTAAGGTTCTCGGTTGCTGCATTGAAGGAGGGGAGAAAATGCTACTATATGAATACATGCCCAACAAAAGCCTCGATTCATTTCTTTTTGATTCGGTTCAAAGTAAATTACTAGATTGGTCGATGCGCTTTAATATCTTGTATGGAATTGCTCGGGGGCTTCTTTATCTTCATCAAGATTCAAGATTAAGGATCATACATAGAGATTTAAAAGTGAGTAATATTTTATTAGATAATGATATGAATCCAAAAATTTCAGATTTTGGCATGGCCAGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACAAGTAGAATAGTTGGGACATATGGTTATATGGCACCTGAATATGCCATTGATGGATTGTTCTCTATAAAATCAGATGTATTTAGCTTTGGTGTATTATTGCTAGAAATTATAAGTGGAAAGAAAAACAGAGCACTCACCCACCAAGACCATGGTCTCAATCTTATTGATCATGCATGGAGATTATGGAAAGCGGACATTCCCCATGAATTGATTAATGATTGTTTGATGGACACATGTATTCTATCTGAAGCTCTACGATGCATTCAAATTGGTCTTTTATGTCTTCAACATCACCCTGATGATAGGCCAAGTATGACAATTGTGGTTGTGATGTTAAGTAGTGAAAATGTTTTACCTCAACCAAAGGAACCTAGTTTCTTAATTAAAAAGTTCTCAATTGAAGGAGAACATTCTTCTGGAAAGGAAACATCTTCATCAGTAAATGAAGTAACTATCTCACTAATAAACGCCAGATAG 1515 0.3815 MCECLQGFEPKSPQQWNAMDWRQGCVRSEPWSCRVKNKDGFRRFAGMKVPNTTHSWVNENMTLEDCKAKCLENCSCTGYAKTDLRGEGSGCAIWFGDLVDLRVTQSKQDLYVRMAASDMDAKHGHKKTVVLVVLITVSLVLVMLLAFSYIYMRKGKHREEIEKTIPSEDLELPFFDLATIVNATNNFSINNKLGEGGFGPVYKGTLLDGREIAVKRLSRSSGQGLNEFKNEVVLCAKLQHRNLVKVLGCCIEGGEKMLLYEYMPNKSLDSFLFDSVQSKLLDWSMRFNILYGIARGLLYLHQDSRLRIIHRDLKVSNILLDNDMNPKISDFGMARMCGGDQIEGKTSRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRALTHQDHGLNLIDHAWRLWKADIPHELINDCLMDTCILSEALRCIQIGLLCLQHHPDDRPSMTIVVVMLSSENVLPQPKEPSFLIKKFSIEGEHSSGKETSSSVNEVTISLINAR. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05230 504 CDD PAN_AP_plant 32 115 - -
Seca4g05230 504 Pfam PAN-like domain 33 101 IPR003609 -
Seca4g05230 504 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 485 - -
Seca4g05230 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Seca4g05230 504 Pfam Domain of unknown function (DUF3403) 459 504 IPR021820 GO:0004674
Seca4g05230 504 ProSiteProfiles PAN/Apple domain profile. 33 115 IPR003609 -
Seca4g05230 504 SMART serkin_6 187 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05230 504 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 263 466 - -
Seca4g05230 504 SUPERFAMILY Protein kinase-like (PK-like) 172 475 IPR011009 -
Seca4g05230 504 Gene3D Hepatocyte Growth Factor 32 116 - -
Seca4g05230 504 Pfam Protein tyrosine and serine/threonine kinase 188 426 IPR001245 GO:0004672|GO:0006468
Seca4g05230 504 ProSiteProfiles Protein kinase domain profile. 187 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05230 504 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 152 262 - -
Seca4g05230 504 SMART ntp_6 36 114 IPR003609 -
Seca4g05230 504 Gene3D Transferase(Phosphotransferase) domain 1 263 468 - -
Seca4g05230 504 Gene3D Phosphorylase Kinase; domain 1 148 262 - -
Seca4g05230 504 CDD STKc_IRAK 193 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05230 Seca-Chr4 97773354 97776200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05230 114 475 Receptor kinase-like Gene Family AT4G23230 53.425 2.61e-133 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05230 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05230 - - gmx:100790436 795.038