Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05229 ATGGCCATTCTTCCTGCTTTGCTTTTTATTGTCTCCAAGCTGCTATTGTTATTCTCTCAAATTTCCTCTGCAACCGATACCATTACCCAGCTCCAGTCACTTCCCGATGGTAGCACCTTGGTTTCTAGAGATGGAACCTTTGAGATGGGTTTTTTCAATCCCGGTAGATCCCCAAATCGCTATGTAGGAATCTGGTACAAAAATGTCCCAGCTAGAACAGTCGTGTGGGTTGCCAACCGTGACAATCCAATCAAAGATAACTCTAGCAAGTTGATCATAAGCCAAGATGGAAACTTTGTGCTTCTCAACCAGAACCAATCTCTACTCTGGTCAACAAACGCAACAGCAAAGACTTCGAATCCTATTGTGCAGCTCTTGGATAGTGGAAATTTAGTACTTAGAGATGAGAAGGATAACAACAATGAAGAAAATTATCTATGGCAGAGCTTTGATCATCCTTGTGATACATTATTACCTGGAATGAAGTTTGGATGGGATCGGAAAACTGGTCTTATTAGGCGTCTCACTGCTTGGAAAAATTGGGATGACCCATCTTCAGGAGATTTTACTTCAGCTATTATGCTTGACAACAATCCCGAAATAGTATTTTGGAAAGGCTCCACTGAGTACTACAGGTCTGGACAATGGAATGGTGTTGGGTTCGGTGGAGTATTTGGATTGATGGCCAACCCACTTTACGATTACGAATTTGTCAACAATGAAGATGAAGTGTATTACATGTACACCCTCAAGAATAGTTCTGTGATTTCTATAATTGTGATGAACCAGACCCTTTATCTTCGTCAACGCCTGACATGGATTCCTGAATCCGAAACTTGGATTGTTTACCAATCCTTGCCACAAGATAGCTGTGATGTTTATAATGTTTGCGGTGCGAATGGAAATTGTTATATTGATGGATCCCCAATGTGTCATTGTTTAGATGGATTCCAGCCAAAATCACCTCAGCGGTGGAATGCAATGGATTGGAGTCAAGGATGTGTGCGCAGTGGAAACTGGAGCTGTGGGGTCAAAAACAGAGATGGTTTTCATAGATTTGTTGGGATGAAATTGCCTGATACTATTAATTCTTGGGTTAATGAAAATATGACATTGGAGGATTGCAAGGCCAAATGCTTGCAAAATTGTTCATGCACAGCTTATGCAAATTTAGACCCAAGTGGAGTGGGTAGTGGCTGTTTCATTTGGTTTGGTGATCTTACTGACATGAGAGTTTCACTAAGCGGGCAAGATCTATACTTGGTAATCACACTTAATTTCATTTTTCAAATTGTAAATGTAGATGATAGTAAAGATGGGCGTAGGAAAAAGGTAGTGTTGGCGGTTATAGTCACTGTTTCAGCTGTCCTGGTTATGCTCTTGGCATTCTCCTACATTTACATGACCAAAACAAAGAAAAAAGAAATCAAAGAGGAAACAGGGAAAACAATGTGGCTAGAAGATAAAGATGAAGGCGTACATGAAGATTTAGAGCTTCCTTTCTTTGATCTTGCTACAATATTAAAGGCCACTAATAATTTCTCAATTGACAACAAGCTCGGTGAAGGTGGCTTTGGGCCTGTATACAAGGGTACATTGCTAGGCGGAGAAGAGATTGCAGTCAAAAGGCTTTCGGGGAGTTCGGGACAAGGATTGAAAGAATTTAAGAATGAAGTTATATTGTGTGCCAAACTTCAACACCGTAATCTTGTTAAGGTTATTGGTTATTGCATTGAAGGGGAGGAGAAAATACTACTATATGAATATATGCCCAACAAAAGCCTTGATTCATTTTTGTTTGATTCAGTTAAAAGTAAATTGTTGGATTGGTCTATGCGCTTCAACATCTTGTATGGAATTGCTCGAGGCCTACTTTATCTTCATCATGATTCTATATTAAGAATCATACATAGAGATTTAAAAGTAAGTAACATTTTATTAGACAGTGACCTGAATCCAAAAATTTCAGATTTTGGCATGGCCAGAATGTGTGGAGGTGATCATATTGAAGGGAAAACAAATAGAATTGTTGGGACATATGGTTATATGGCACCTGAATATGCCATTGATGGGTTATTCTCTACAAAATCAGATGTATTTAGCTTTGGCGTTTTATTGCTAGAAATAATAAGTGGAAAGAAAAACAGAGAACTTACTTATCGGGATCATGATCACAATCTTATTGGGCATGCATGGAGACTATGGAAAGAAGGCATTCCACAAGAGTTGATCAATGATTGCTTGAGGGGTTCGTGCACTTTACCTGAAGCTCTACGTTGTATTCAAATTGGTCTTTTATGTTTACAACATAATCCTGATGATAGACCAAACATGACATATGTGGTCGTGATGTTGAATAGTGAAATTCCTTTACCGCAACCAAAGGAACCTGGTTTCTTAATTAAAAGGGTCTCAAATGAAGTAGGAAATTCTTCTGGGAAACAAACATATTCTTCAGTGAATGAAGTAACCATCTCGATATTAAATGCTAGGTAG 2496 0.3882 MAILPALLFIVSKLLLLFSQISSATDTITQLQSLPDGSTLVSRDGTFEMGFFNPGRSPNRYVGIWYKNVPARTVVWVANRDNPIKDNSSKLIISQDGNFVLLNQNQSLLWSTNATAKTSNPIVQLLDSGNLVLRDEKDNNNEENYLWQSFDHPCDTLLPGMKFGWDRKTGLIRRLTAWKNWDDPSSGDFTSAIMLDNNPEIVFWKGSTEYYRSGQWNGVGFGGVFGLMANPLYDYEFVNNEDEVYYMYTLKNSSVISIIVMNQTLYLRQRLTWIPESETWIVYQSLPQDSCDVYNVCGANGNCYIDGSPMCHCLDGFQPKSPQRWNAMDWSQGCVRSGNWSCGVKNRDGFHRFVGMKLPDTINSWVNENMTLEDCKAKCLQNCSCTAYANLDPSGVGSGCFIWFGDLTDMRVSLSGQDLYLVITLNFIFQIVNVDDSKDGRRKKVVLAVIVTVSAVLVMLLAFSYIYMTKTKKKEIKEETGKTMWLEDKDEGVHEDLELPFFDLATILKATNNFSIDNKLGEGGFGPVYKGTLLGGEEIAVKRLSGSSGQGLKEFKNEVILCAKLQHRNLVKVIGYCIEGEEKILLYEYMPNKSLDSFLFDSVKSKLLDWSMRFNILYGIARGLLYLHHDSILRIIHRDLKVSNILLDSDLNPKISDFGMARMCGGDHIEGKTNRIVGTYGYMAPEYAIDGLFSTKSDVFSFGVLLLEIISGKKNRELTYRDHDHNLIGHAWRLWKEGIPQELINDCLRGSCTLPEALRCIQIGLLCLQHNPDDRPNMTYVVVMLNSEIPLPQPKEPGFLIKRVSNEVGNSSGKQTYSSVNEVTISILNAR. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05229 831 ProSiteProfiles Protein kinase domain profile. 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05229 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 479 589 - -
Seca4g05229 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Seca4g05229 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Seca4g05229 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 150 - -
Seca4g05229 831 Pfam D-mannose binding lectin 73 179 IPR001480 -
Seca4g05229 831 SUPERFAMILY Protein kinase-like (PK-like) 498 802 IPR011009 -
Seca4g05229 831 CDD STKc_IRAK 520 786 - -
Seca4g05229 831 PIRSF SRK 1 831 IPR024171 GO:0004674
Seca4g05229 831 CDD PAN_AP_plant 341 421 - -
Seca4g05229 831 Gene3D Phosphorylase Kinase; domain 1 473 589 - -
Seca4g05229 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 793 - -
Seca4g05229 831 Pfam PAN-like domain 342 410 IPR003609 -
Seca4g05229 831 SMART ntp_6 345 423 IPR003609 -
Seca4g05229 831 Pfam Protein tyrosine and serine/threonine kinase 515 783 IPR001245 GO:0004672|GO:0006468
Seca4g05229 831 Gene3D - 19 150 IPR036426 -
Seca4g05229 831 SMART serkin_6 514 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05229 831 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Seca4g05229 831 Gene3D Hepatocyte Growth Factor 341 421 - -
Seca4g05229 831 Gene3D Transferase(Phosphotransferase) domain 1 590 791 - -
Seca4g05229 831 Pfam Domain of unknown function (DUF3403) 788 831 IPR021820 GO:0004674
Seca4g05229 831 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Seca4g05229 831 SMART blect_4 31 153 IPR001480 -
Seca4g05229 831 CDD B_lectin 32 153 IPR001480 -
Seca4g05229 831 ProSiteProfiles PAN/Apple domain profile. 342 424 IPR003609 -
Seca4g05229 831 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Seca4g05229 831 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05229 Seca-Chr4 97743440 97747654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05229 445 813 Receptor kinase-like Gene Family AT4G05200 52.162 1.61e-124 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05229 PK_Tyr_Ser-Thr 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05229 - - gmx:100790436 1213.36