Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05228 ATGCTTGTTATTTCCAACCTACTATTCTCCTTCTCTCAAATTTCTTCTGCAACCTATACCATTACCCAATTTAAGCCACTTATTGATGGCACTGGCAGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGTTTCTTCACTCCCGGTAGTTCGTCAAACCGCTATGTGGGAATCTGGTACAAAATTATCCCAGATAGAAGAGTCGTTTGGGTTGCCAACCGTGACAATCCAATTAAAGACAACTCCAGCAAGTTGATCATAAGCCAAGAGGGAAACCTTGTGCTTCTCAGCCAGAACCAATCTCTTCTGTGGTCAACAAACGCAACAACAAAGGCTTCCAGTCCAGTTGTGCAGCTCTTGGACAATGGAAATTTAATACTTAGAAATGAGAAGAACAACAACAATGAAGAAAATTTCCTGTGGCAGAGCTTTGACCATCCTGGCGATACAGTATTACCAGGAATGAAGATTGGATGGAACCGAAAAACTGGTATTAATATGCGTATTTATGCTTGGAAAAATTGGGATGACCCATCTTCTGGAGACTTTACTTCGGGTATAATGCTTACTAAAAATCCTGAAAGCGTATTTTGGAAGGGCTCTGTTAAGTTTTACAGGAGTGGCCCCTGGAATGGTAACCGATTCGGTGGAGTAATCGGATTGAGGAGTAACCCGATTTTCGATTACAAATTTGTCATCAATAAAGACGAAGTGTATTACACATACACCCTCAAGAATAGTTCTGTGATTTCTATAATTGTTTTGAACCAAACCCTTTCTCTTCGTCAACGCCTCGCATGGGCTCCTCAAACTAGAAGGTGGAGTGTTTACCAATCCTTGCCACAAGATAGTTGTGATGCTTATAATGTTTGCGGCGCTTATGGAAATTGCAACATTGATGCATCGCCAATTTGCCAATGTTTGGAGGGATTTGAGGCAAAATCACCCCTGCAGTGGAGTGCATTAGATTGGAGACAAGGATGTGTGCGCAGTGAACCGTGGAGCTGCGGCGTCAAAAACAAAGATGGCTTTCGTAGATTTGTTGGGATGAAATTGCCAGATACTACAGAATCTTGGGTTAATCAAAGTATGACACTGGAGGATTGCGAGGCTAAATGCTTGGAAAATTGTTCCTGCACAGCTTATGCAAGCAGTGACATAAGAGGGGCTGGTAGTGGCTGTGCCATCTGGTTCGGTGATCTTGTTGATTTGAGAGTTTTAGAAAGTGGGCAGGATCTATATGTTCGAATGGCTACTCTAGATATTGTTTTAAATGCAGATGCTAAGCATGGGCGCAAGAAAAAGATAGTAGTTTTGGTGGTTATAATCATTGTTTCATTGCTCTTTGTGATGCTAATGGCATTTTTCTACGTTTACATGACCAAGACAAAGCATAGAGGTAAATTTCTTAGCCAGAAAGCCTTTTTTTATTTCTCAGAGTCTATAATGAGTTTTATTGAACAGTTGCGACATCCCAAAGATTTGGAGCTTCCTTTCTTTGATTTTCCTACCATGGTTAATGCCACCAATAAATTTTCAATTGAAAATAAGCTTGGTGAAGGAGGTTTTGGGCCTGTATACAAGGGTACATTGTTAGATGGACAAGAAATTGCAATCAAAAGGCTTTCAAAGAGTTCTGGACAAGGATTGAAAGAATTTAAGAATGAAGTTATATTGTGTGCTAAACTTCAACACCGAAATCTTGCTAAGGTTATTGGATATTGCATTGAAGGAGAGGAGAAAATGCTTCTCTACGAATACATGCCCAACAAAAGTCTCGATTCATTTCTTTTCGATTCGGGTCAAAGTAAACTTCTAGATTGGTCTACACGCTTTAACATCTTGTATGGAATTGCTCGAGGGCTTCTTTATCTTCATCAGGATTCTCGATTAAGGATCATACACAGAGATTTAAAAGCAAGTAATATCTTATTAGATGATAATATGAATCCAAAAATTTCAGATTTTGGCATGGCAAGGATGTGTGGAGGTGATCAAATTGAAGGGAATACAAGCAGGATAGTTGGGACATACGGTTATATGGCACCAGAATATGCCATTGATGGATTGTTCTCTATAAAATCAGATGTATTCAGCTATGGAGTATTATTGTTGGAGATTGTAAGCGGAAAGAAAAATAGAGCACTTACTTACCATGACTATAATCAAAATCTTATTGGGCATGCATGGAGATTGTGGAAAGATGGCATTCTAGAAGAATTGGTTGATACTTGTTTGAGGGATTCATGTATTCTATCTGAAGCATTACGTTGTATTCAAATTGGTCTTTTATGTCTGCAACATCATCCTGATGATAGGCCAAACATGACATCTGTGGTTATAATGTTGAATAGTGAAATTGCTTTACCTCAACCAAAGGAACCTGGTTTTTTAATTGGAAAGGTATCAGTTGAAGGAGAATGTTCTTCTGAAAGACAAACATCTTCAATCAATGAAGTAACTGTCTCAATATTAAACGCTAGATAA 2490 0.39 MLVISNLLFSFSQISSATYTITQFKPLIDGTGSTLVSKDGTFELGFFTPGSSSNRYVGIWYKIIPDRRVVWVANRDNPIKDNSSKLIISQEGNLVLLSQNQSLLWSTNATTKASSPVVQLLDNGNLILRNEKNNNNEENFLWQSFDHPGDTVLPGMKIGWNRKTGINMRIYAWKNWDDPSSGDFTSGIMLTKNPESVFWKGSVKFYRSGPWNGNRFGGVIGLRSNPIFDYKFVINKDEVYYTYTLKNSSVISIIVLNQTLSLRQRLAWAPQTRRWSVYQSLPQDSCDAYNVCGAYGNCNIDASPICQCLEGFEAKSPLQWSALDWRQGCVRSEPWSCGVKNKDGFRRFVGMKLPDTTESWVNQSMTLEDCEAKCLENCSCTAYASSDIRGAGSGCAIWFGDLVDLRVLESGQDLYVRMATLDIVLNADAKHGRKKKIVVLVVIIIVSLLFVMLMAFFYVYMTKTKHRGKFLSQKAFFYFSESIMSFIEQLRHPKDLELPFFDFPTMVNATNKFSIENKLGEGGFGPVYKGTLLDGQEIAIKRLSKSSGQGLKEFKNEVILCAKLQHRNLAKVIGYCIEGEEKMLLYEYMPNKSLDSFLFDSGQSKLLDWSTRFNILYGIARGLLYLHQDSRLRIIHRDLKASNILLDDNMNPKISDFGMARMCGGDQIEGNTSRIVGTYGYMAPEYAIDGLFSIKSDVFSYGVLLLEIVSGKKNRALTYHDYNQNLIGHAWRLWKDGILEELVDTCLRDSCILSEALRCIQIGLLCLQHHPDDRPNMTSVVIMLNSEIALPQPKEPGFLIGKVSVEGECSSERQTSSINEVTVSILNAR. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05228 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Seca4g05228 829 Pfam Protein tyrosine and serine/threonine kinase 514 781 IPR001245 GO:0004672|GO:0006468
Seca4g05228 829 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
Seca4g05228 829 Gene3D Hepatocyte Growth Factor 336 419 - -
Seca4g05228 829 Gene3D Phosphorylase Kinase; domain 1 487 588 - -
Seca4g05228 829 ProSiteProfiles PAN/Apple domain profile. 337 419 IPR003609 -
Seca4g05228 829 CDD B_lectin 27 148 IPR001480 -
Seca4g05228 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 179 IPR036426 -
Seca4g05228 829 Gene3D - 13 145 IPR036426 -
Seca4g05228 829 Pfam D-mannose binding lectin 69 174 IPR001480 -
Seca4g05228 829 Pfam Domain of unknown function (DUF3403) 786 829 IPR021820 GO:0004674
Seca4g05228 829 Pfam PAN-like domain 337 405 IPR003609 -
Seca4g05228 829 CDD STKc_IRAK 519 785 - -
Seca4g05228 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 145 - -
Seca4g05228 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 775 - -
Seca4g05228 829 SMART blect_4 26 148 IPR001480 -
Seca4g05228 829 SMART ntp_6 340 418 IPR003609 -
Seca4g05228 829 Gene3D Transferase(Phosphotransferase) domain 1 589 792 - -
Seca4g05228 829 SMART serkin_6 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05228 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 480 588 - -
Seca4g05228 829 ProSiteProfiles Protein kinase domain profile. 513 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05228 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 336 418 - -
Seca4g05228 829 SUPERFAMILY Protein kinase-like (PK-like) 497 793 IPR011009 -
Seca4g05228 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Seca4g05228 829 ProSiteProfiles Bulb-type lectin domain profile. 20 141 IPR001480 -
Seca4g05228 829 CDD PAN_AP_plant 336 419 - -
Seca4g05228 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05228 Seca-Chr4 97686538 97693421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05228 438 800 Receptor kinase-like Gene Family AT4G23230 53.022 3.09e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05228 PK_Tyr_Ser-Thr 9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05228 - - gmx:100790436 1186.02