Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05225 ATGGCTATTCTTCCTACTTTGGTTGTTATTTCCAAGCTACTGTTGTTATTCTCTCAAATTTCCTCTGCCACTGATACCATTACCCAGCTTCAGTCACTTCCTGATGGCAGCACCTTGTTTTCTAAGGATGGAACCTTTGAGTTGGATTTCTTCAATCCCGGTAGTTCCTCAAACCGTTATGTTGGAATCTGGTACAAAAATATCCCTTTAACAACAGTCGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCCAGCAAGTTGGTCATAAACCAAGAGGGAAACCTTGTGCTTCTCAGCCAGAACCAGACTCTTCTTTGGTCAACCAATTCAACCACAAAGGCTTCAAGTCCCATTGTGCAGCTCTTAGATAGTGGAAATTTAGTAATTAGAGATGAGAAGGACAATAAGAATGAAGAAAAATTCTTGTGGCAGAGCTTTGATCATCCTTGTGATACATTATTACCAGGAATGAAGTTTGGATGGGATCGAAAAACTGGTATTGATCGGCGTATTACAGCTTGGAAGAATTGGGATGACCCTTCTCCAGGAGACTTTACTTGGGGCATTGTCCATACTAGCAACCCCGAAATGGTAATGTGGAAAGGCTCTGTTGAGTCCCACAGGAGTGGCCCCTGGAATGGTAACCGATTCGGTGGAGCAATCGGAATGAAAGCTAATCCACTTTTCGATTACAAATTTGTCACCAATAAAGACGAAGTGTATTACATGTACACCCTCGAGAATAGTTCTGTGATTTCTATAATTGTTTTGAACCAAACTCTTTATCTTCGTCAACGCCTCACATGGGTTCCGGAAACTAGAACTTGGACTGTTTACAAATCCTTGCCACAAGACAGTTGTGATGTTTATAATGTTTGCGGCGCATATGGAAATTGCCTCATTGAAGGATCGCCAATTTTCCAATGTTTGGAGGGCTTCGAGCCAAAATCACCTCAACGGTGGAATGCAATGGATTGGGGACAAGGCTGTGTGCGAGTGGAAACTGGAGCTGCGGGGTCAAAAACAGAGATGGTTTTCATAAATTTGAAGGGACCCAAGTTCGAGTTCTATACCAGAACATCTTGGATTAATGAAAATATGACACTGGAGGATTGCAGGACCAAATGCTTCGAAAATTGTTCATGCACAGCTTATGCAAGCTTAGACCCAAGTGGAGCGGGTAGGCGTTGTTCCATTTGGTTTGGTGATCTTCTTGATTTGAGAGTTTCACAAACCGGCCAAGATCTTTATGTTCGAACGGCTTTAGAAACGGATGATAAACATAGACAAATGAAAAAGGTAGTCTTGGCGGTGACAATCACAGTTTCAGCTGCCCTTGTGATGCTATTGGCATTCTCCTATATTTACATGACCAAATCAAAGTATAAAGGTAAATTTCAAAGCTTCGATGAAGATGGACATGAAGATTTGGAACTTCCTTTCTTTGATTTTGCTACAATACTCAATGCCACCAATAATTTCTCCATTGACAACAAGCTCGGTGAAGGTGGTTTCGGACCTGTATACAAGGGTACATTGCAAGAGGAACAAGAGATTGCAGTCAAAAGACTTTCAGGGAGTTCTAGACAAGGATCACTAGAATTTAAGAATGAAGTTATATTATGTGCCAAACTTCAACATAGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTGAAGGAGAGGAGAAAATGCTACTCTATGAATACATGCCCAACAAAAGCCTTGATTCATTTCTTTTCGATTCGGTCCAAAGTAGATTACTAGATTGGCCTATGCGCTTTAACATTCTGTATGGAATTGCTCGGGGGCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATACATAGAGATTTGAAAGCAAGTAACATTTTATTAGACAATAATATGAATCCGAAAATTTTGGATTTTGGCATGGCCAGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACAAACAGAATAGTTGGAACATACGGTTATATGGCACCTGAATATGCCGTTGATGGATTATTCTCTATAAAATCAGTTGTATTTAGCTATGGTGTATTGTTTCTAGAAATTGTAAGTGGGAAGAAAAATAAGGCACTTACCTACCACGAAAATGATCTCAATCTTATCCGGCATGCATGGAGATTGTGGAAAGAGGACATTCCAGAGAAAATGATTGATGATTGTTTGAGGTATTCGTGTATTCTACCTGAAGCTCTACGTTGCATTCAAATTGGTCTTTTATGTGTGGAACATCATCCTTGTGATAGGCCAAACATGACATTCGTGGTTGTGATGTTAAGTAGTGAAAATCCTTTACCTCAACCAAAGGAACCTGGTTTCTTCATTAGAAATATCTCAAATGAAGGAGACAATTCTAACAAAGGACTAAAATCTTTTTCAATAAATGAAGTAACCATCTCACTATTAAACGCCGATAAAGAAATTAGTTTATTTCTAGAATTATATGAGAAATTATGTAACTTGTACATGGAACTTATTGTTATACATTACTCATTATAA 2526 0.3907 MAILPTLVVISKLLLLFSQISSATDTITQLQSLPDGSTLFSKDGTFELDFFNPGSSSNRYVGIWYKNIPLTTVVWVANRDNPIKDNSSKLVINQEGNLVLLSQNQTLLWSTNSTTKASSPIVQLLDSGNLVIRDEKDNKNEEKFLWQSFDHPCDTLLPGMKFGWDRKTGIDRRITAWKNWDDPSPGDFTWGIVHTSNPEMVMWKGSVESHRSGPWNGNRFGGAIGMKANPLFDYKFVTNKDEVYYMYTLENSSVISIIVLNQTLYLRQRLTWVPETRTWTVYKSLPQDSCDVYNVCGAYGNCLIEGSPIFQCLEGFEPKSPQRWNAMDWGQGCVRVETGAAGSKTEMVFINLKGPKFEFYTRTSWINENMTLEDCRTKCFENCSCTAYASLDPSGAGRRCSIWFGDLLDLRVSQTGQDLYVRTALETDDKHRQMKKVVLAVTITVSAALVMLLAFSYIYMTKSKYKGKFQSFDEDGHEDLELPFFDFATILNATNNFSIDNKLGEGGFGPVYKGTLQEEQEIAVKRLSGSSRQGSLEFKNEVILCAKLQHRNLVKVLGCCIEGEEKMLLYEYMPNKSLDSFLFDSVQSRLLDWPMRFNILYGIARGLLYLHQDSRLRIIHRDLKASNILLDNNMNPKILDFGMARMCGGDQIEGKTNRIVGTYGYMAPEYAVDGLFSIKSVVFSYGVLFLEIVSGKKNKALTYHENDLNLIRHAWRLWKEDIPEKMIDDCLRYSCILPEALRCIQIGLLCVEHHPCDRPNMTFVVVMLSSENPLPQPKEPGFFIRNISNEGDNSNKGLKSFSINEVTISLLNADKEISLFLELYEKLCNLYMELIVIHYSL. 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05225 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Seca4g05225 841 Gene3D Phosphorylase Kinase; domain 1 471 572 - -
Seca4g05225 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 573 776 - -
Seca4g05225 841 Pfam Protein tyrosine and serine/threonine kinase 498 721 IPR001245 GO:0004672|GO:0006468
Seca4g05225 841 Pfam D-mannose binding lectin 72 178 IPR001480 -
Seca4g05225 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Seca4g05225 841 SMART ntp_6 344 423 IPR003609 -
Seca4g05225 841 Gene3D Transferase(Phosphotransferase) domain 1 573 776 - -
Seca4g05225 841 CDD PAN_AP_plant 353 424 - -
Seca4g05225 841 Gene3D - 18 149 IPR036426 -
Seca4g05225 841 ProSiteProfiles PAN/Apple domain profile. 333 424 IPR003609 -
Seca4g05225 841 SUPERFAMILY Protein kinase-like (PK-like) 480 795 IPR011009 -
Seca4g05225 841 PIRSF SRK 1 814 IPR024171 GO:0004674
Seca4g05225 841 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Seca4g05225 841 SMART serkin_6 497 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05225 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 149 - -
Seca4g05225 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 572 - -
Seca4g05225 841 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 759 - -
Seca4g05225 841 SMART blect_4 30 152 IPR001480 -
Seca4g05225 841 Pfam PAN-like domain 348 410 IPR003609 -
Seca4g05225 841 CDD B_lectin 31 152 IPR001480 -
Seca4g05225 841 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Seca4g05225 841 Pfam Domain of unknown function (DUF3403) 769 813 IPR021820 GO:0004674
Seca4g05225 841 ProSiteProfiles Protein kinase domain profile. 497 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05225 841 CDD STKc_IRAK 503 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05225 Seca-Chr4 97546652 97560369 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05225 449 818 Receptor kinase-like Gene Family AT4G23150 50.943 1.21e-120 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05225 PK_Tyr_Ser-Thr 5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05225 - - gmx:100790436 1167.53