Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05223 ATGGCCATTTTAACTTTTTCGTTTGTTTTCGCCAAACTACTTATACTGTTTCCTCCATTTTCGTCTGCAAATGATTCTTTTAGCAGAACGCAGTCACTTCCTGATGGCAGAACCTTGGTGTCTAAAGATGGAACCTTTGAAATGGGTTTCTTCAGTCCAGGCAATAACAACACAAACCGTTACCTCGGAATCTGGTACAATAGGATCCCAATTAGAACTGTTGTTTGGGTTGCCAACCGTGATAACCCAGTCAAAGACAACTCCAGCAAGTTGAGCATAAACACAGAGGGAAAGCTTGTGATCCTAAGAAAGAACCAAACTCTTGTTTGGTCAGCAAACTCAACAGCACAGCCACAGGTAGAGAGTCCAATTTTGCAGCTTTTAGACTCAGGAAACTTAGTACTAAGAGATGAGAAAGACCAAAATCCCCAAAACTACTTGTGGCAGAGCTTTGACTATCCTTGTGATACATTTTTGGCTGGAATGAAGATTGGATGGAACCTGAAAACAGGTCTTAATCGTTATTTATCAGCATGGAAGAATTGGGATGACCCTTCTCCAGGGGATCTCAGTTGGGGTCTTGTACTTGGCAACACCCCTGAATTGGTTATGTGGAAGGGCTCCACGGAGTACTATAGGAGTGGCCCTTGGAATGGTGTTAGATTCAATGGTAAAACCACTTCCCTTTTCAACTTAGAACTTGTGACCACTGATGATGAGGTGTTTTACACTTACAATCTCATGAATAAGTCATTGATTACAAGAGTTGTTCTGAACCAATCTCTTTATTCTCGTCAGCGTTACAATTGGATTGAGGAAAACCAAACTTGGAGGCTTTATTCATCAGTGCCACGAGACAATTGTGACAATTATAATGTTTGTGGTGCATATGGGAATTGTATCGTGAATGAATCACCACCATGCCAGTGTCTAACAGGGTTTAGGCCAAAATCACCCCAAAATTATGAGGCATTGGACTGGACACAAGGATGTGTGCTTAGTGAACCGTGGAGTTGTAGGGTGAAAAACCAAGATGGTTTTAAAATGTTTAGTGGGTTGAAAATGCCAGATACTACAAAGTCTTGGGTTAATGGAAACTTGACACTTGAGAATTGCAGAGCTAAATGCTTAGAAAACTGTTCTTGCACAGCCTACGCAAACTTGGATATCAGGGGAGAAGGTAATGGTTGTATTATTTGGTTTGGAGCTCTAATTGATATAAGGGTGGCTTCAGTTCCTGGACAAGATCTATATATTCGAATGGCTACTTCAGAAACTGATGCTATCCGTGAAGATGCGAATGGAGGGCATAAGAAAAGGGTGGCCGTGGCAATTTCAGTTGCCCTTATCTTGGTTCTTGTGATTGTTTTCACTTTCACTTACATATACTGGAAGAAAAGAAAGCTTAGAATTAGAGGAGGGAGAACAGAAAATACCTCAGAAGAAAAGAAAGAAGAAGGTCATGAGGAAGACTTGGAGCTGCCTTTCTTTGATTTTGCTACAATAGCTCATGCCACTAATGACTTCTCAAGTGATAAGAGGCTTGGCCAAGGTGGTTTTGGAGCTGTCTACAGGGGTACACTAGCAGATGGACAAGAGATTGCTGCCAAGAGACTTTCAAGCACTTCTGGACAGGGAATTCAAGAATTTAAGAATGAAGTTGTATTATGTGCCAAACTTCAGCACAGAAATCTTGTTAAGGTTCTCGGTTGTTCCACCCAAGGAGAGGAGAAAGTGCTCATCTATGAATACATGCCTAATAAAAGCCTAGATTCCTTTCTCTTTGATTCTTCTCAAAGTGGACTCCTAAATTGGTCTATGCGCTTTAACATTATATTTGGAATTGCTCGGGGACTTCTTTATCTTCATCAAGACTCAAGATTAAGAATCATTCATAGAGATCTTAAAGCAAGTAATATTCTATTAGATGGCGAGTTAAATCCAAAAATTTCAGATTTTGGAGTGGCACGAATGTTCAGTGGAAATCAAACAGAAGCGAATACAAAAATGGTAGCTGGAACATATGGCTACATGGCACCAGAATATGCAATTGATGGGCTATTCTCCATTAAATCTGATGTATTTAGCTTTGGTGTGTTATTACTGGAGATAGTAAGTGGGAAGAAAAACACAAGAGTTTTCTTTCCAAATAATGGATTTAATCTTTTAGGACATGCATGGAGATTATGGAAAGAGAACACTCCAATGAAATTAATCGATGCTTTTTTGGGTGACTCATTTTCCATATCAGAAGTACTAAGATGCATCCATGTTGGTCTTCTATGTGTGCAACTGCATCCAGAGGATAGGCCAAACATGGCAACAGTGATTTTGATGTTGAGCAGTGAAAATACTCTGCCACAGCCTAAGGAGCCTGGTTTCCTTATTGAAAGGATGTCAATTGTTGGAGAATCTTCGTCTAGCAATCAGATTAATTCTTCAACTAATGAATTAACTGTGACACTGTTAGAACCTAGATAA 2481 0.3994 MAILTFSFVFAKLLILFPPFSSANDSFSRTQSLPDGRTLVSKDGTFEMGFFSPGNNNTNRYLGIWYNRIPIRTVVWVANRDNPVKDNSSKLSINTEGKLVILRKNQTLVWSANSTAQPQVESPILQLLDSGNLVLRDEKDQNPQNYLWQSFDYPCDTFLAGMKIGWNLKTGLNRYLSAWKNWDDPSPGDLSWGLVLGNTPELVMWKGSTEYYRSGPWNGVRFNGKTTSLFNLELVTTDDEVFYTYNLMNKSLITRVVLNQSLYSRQRYNWIEENQTWRLYSSVPRDNCDNYNVCGAYGNCIVNESPPCQCLTGFRPKSPQNYEALDWTQGCVLSEPWSCRVKNQDGFKMFSGLKMPDTTKSWVNGNLTLENCRAKCLENCSCTAYANLDIRGEGNGCIIWFGALIDIRVASVPGQDLYIRMATSETDAIREDANGGHKKRVAVAISVALILVLVIVFTFTYIYWKKRKLRIRGGRTENTSEEKKEEGHEEDLELPFFDFATIAHATNDFSSDKRLGQGGFGAVYRGTLADGQEIAAKRLSSTSGQGIQEFKNEVVLCAKLQHRNLVKVLGCSTQGEEKVLIYEYMPNKSLDSFLFDSSQSGLLNWSMRFNIIFGIARGLLYLHQDSRLRIIHRDLKASNILLDGELNPKISDFGVARMFSGNQTEANTKMVAGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGKKNTRVFFPNNGFNLLGHAWRLWKENTPMKLIDAFLGDSFSISEVLRCIHVGLLCVQLHPEDRPNMATVILMLSSENTLPQPKEPGFLIERMSIVGESSSSNQINSSTNELTVTLLEPR. 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05223 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 788 - -
Seca4g05223 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 584 - -
Seca4g05223 826 CDD STKc_IRAK 515 780 - -
Seca4g05223 826 SMART blect_4 30 154 IPR001480 -
Seca4g05223 826 Gene3D Phosphorylase Kinase; domain 1 471 584 - -
Seca4g05223 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Seca4g05223 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Seca4g05223 826 SMART ntp_6 342 421 IPR003609 -
Seca4g05223 826 ProSitePatterns Protein kinases ATP-binding region signature. 515 537 IPR017441 GO:0005524
Seca4g05223 826 Pfam Domain of unknown function (DUF3403) 781 826 IPR021820 GO:0004674
Seca4g05223 826 Gene3D - 20 151 IPR036426 -
Seca4g05223 826 Pfam Protein tyrosine and serine/threonine kinase 512 714 IPR001245 GO:0004672|GO:0006468
Seca4g05223 826 Pfam D-mannose binding lectin 73 180 IPR001480 -
Seca4g05223 826 Gene3D Hepatocyte Growth Factor 338 415 - -
Seca4g05223 826 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 771 - -
Seca4g05223 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Seca4g05223 826 SUPERFAMILY Protein kinase-like (PK-like) 492 791 IPR011009 -
Seca4g05223 826 CDD B_lectin 30 154 IPR001480 -
Seca4g05223 826 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Seca4g05223 826 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05223 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 151 - -
Seca4g05223 826 Pfam S-locus glycoprotein domain 212 318 IPR000858 GO:0048544
Seca4g05223 826 Pfam PAN-like domain 339 407 IPR003609 -
Seca4g05223 826 Gene3D Transferase(Phosphotransferase) domain 1 585 790 - -
Seca4g05223 826 SMART serkin_6 509 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05223 826 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Seca4g05223 826 CDD PAN_AP_plant 338 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05223 Seca-Chr4 97509114 97512620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05223 497 826 Receptor kinase-like Gene Family AT4G11530 56.677 8.61e-130 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05223 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05223 - - gmx:100790436 1064.29