Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05222 ATGGATATTCATATTCTTTCGTTATTGATAATTGTTGCATGTATGCTTATACCTTCTTTCAAAGTATCCATTGCAGTGGATACTATTCTTCTGTCCCAGTCCATGAGTGATGGCATGACCTTGGTTTCCCAAGGTGGAAAATTTAAACTTGGTTTCTTCAGTCCTGAGAATTCCAACAAACGTTACCTGGGGATTTGGTACAACAATATCCCAACTCAGACTGTTGTTTGGGTTGCAAAAGGTGCCAAAGCCATCAATGATTCCTCTGGCATCTTAACACTGAACAGCACTGGCAACCTTGTCCTCTCACAGCATGACAAGGTAATCTGGTACACAACATCTCAGAAACAAGCACAGAATCCAGTGGCACAGCTACTGGATTCAGGGAATCTTGTGGTAAGAGATGAGAGTGAAACAAACCCAGAAGCCTATTTGTGGCAGAGCTTTGACTACCCATCTGATACACATCTGCCAGGGATGAAGTTGGGATGGAACCTCAAAACTGGTATGGAATGGAGAATGACATCTTGGAAGAGTCCTGATGATCCATCCCCAGGAGACTTTTATTGGGGTTTATTGCTTCATAATTATCCTGAGTTTTATCTGATGAAGGGAACAAAAAAGTTTGTGAGAATTGGACCATGGAATGGTCAGCATTTTAGTGGCATACCAGATCAAAAGCCCAACACCATTTATTTGACCATTTATGTGTCCAATAAGGATGAGATGTTCCTCACGCATACTCTCAAGAATGATTCTGTACTTACAAGACTGGTAATGAATCAAACCACTTCTATGAGTACTCGGTACGTGTGGATCGAAGATCAACAAATTTGGCAGGTGTATAAATCACTTCCAAAAGACAATTGTGACTTTTATGGCAGTTGTGGAGCCTATGGGAGTTGCATAATTACAGGCTCCCAAATTTGCCAATGTTTACCAAAGTTCAGTCCCAAGTCACCAGAAGCATGGTACTCATCTGACTGGTCTCATGGATGTGTCCGCAATAAGCCACTGAACTGCACAGACAAACTCAAGGATGGATTTATGATGGTGGAAGGTGTAAAAGTGGCAGAAACTTCACGTACTTGGGTAGATGAGACAATGGGTCTAGATGAATGCAGAGTCAAGTGTTTGAATAATTGTTCTTGTATGGCTTATACTAATTTTAACATAACAGGAGGGGGTAGTGGCTGTGTCATGTGGTTTGATGATCTATTTGATATTAGACAATTTGAAAATGTTGGGCAGGATCTGTATATTCGAATGGATGCTTCAGAATTGGGTAAAGAGGAACATGATGGGCGCAAGAAGGAGCTGATAGGAATAGCTGCTGCTGCTACAGCCCTTTTAATTTCAGGGATGCTTTTTCTTGGTTATCGTCTCCATATCCTCCGTCGCAGCATACCTGAGGATTCAGAAAGTATAGAACGAGAAAGTGATAGAGGAGGTAGCGAGGATGATCTTGACCTCCCATTGCTTGACCATTCAGTAATAGTCACCACCACTGATAACTTCTCAATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAAGATTAGTATGTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGAAGCTCTGGACAAGGAATGACTGAATTCAAAAATGAAGTAAAACTTATAGCGAAACTTCAGCACCGAAATCTTGTTAAGCTTATTGGTTGTTGCATTCAGGAAGAAGACAGAATACTGGTTTATGAATACATGACTAACGGTAGCTTAGATTGGTTCATTTTTGATGATACTAAAAGCAAATTGCTTGATTGGCCTAAACGCTTCAACATTATCTGTGGAATTGCTCGAGGTCTTCTCTACCTTCATCATGATTCTAGATTAAGGATAATTCATAGAGATCTCAAACCAAGTAATGTCTTGCTTGATGACAAGCTGAACCCCAAAATATCAGATTTTGGAATTGCTAGAATTTTTGGTGGAGATCAGATAGAAGGAAATACAAAGAGAGTGGTTGGCACTTATGGCTACATGGCACCAGAATATGCTGTTGATGGGCTATTTTCAGTGAAATCTGATGTTTTTAGTTTTGGGATTTTGTTGCTGGAGATTATATGTGGAAAGAGAAGTAGAGGATTTTATCTTGAAAATGACTCTCCTAACCTTGTCACTCATGCATGGAATTTGTGGAAAGAGGGCAGGGCTTTGCAACTGATTGACCCAAACATAGAGGACTCTTGTGTTCTATCAGAGATATTGCGTTGCATCCATGTAAGTCTCTTGTGTGTGCAGCAATACCCAGAAGATAGACCTGTCATGCCTTCTGTGTTTCTAATGTTGGGGAGTGACAGTGAATTGGCTGAGCCAAAAGAGCCTGGTTACTTTGTGAAGAAGGATTCATTTGCAGCAGCTTCCAACTCAGATGGAAGTTATAAGATCACTACCAATGAAATGACTATCACCTTATTAGAAGCCCGGTGA 2472 0.407 MDIHILSLLIIVACMLIPSFKVSIAVDTILLSQSMSDGMTLVSQGGKFKLGFFSPENSNKRYLGIWYNNIPTQTVVWVAKGAKAINDSSGILTLNSTGNLVLSQHDKVIWYTTSQKQAQNPVAQLLDSGNLVVRDESETNPEAYLWQSFDYPSDTHLPGMKLGWNLKTGMEWRMTSWKSPDDPSPGDFYWGLLLHNYPEFYLMKGTKKFVRIGPWNGQHFSGIPDQKPNTIYLTIYVSNKDEMFLTHTLKNDSVLTRLVMNQTTSMSTRYVWIEDQQIWQVYKSLPKDNCDFYGSCGAYGSCIITGSQICQCLPKFSPKSPEAWYSSDWSHGCVRNKPLNCTDKLKDGFMMVEGVKVAETSRTWVDETMGLDECRVKCLNNCSCMAYTNFNITGGGSGCVMWFDDLFDIRQFENVGQDLYIRMDASELGKEEHDGRKKELIGIAAAATALLISGMLFLGYRLHILRRSIPEDSESIERESDRGGSEDDLDLPLLDHSVIVTTTDNFSIKNKIGEGGFGPVYKGRLVCGQEIAVKRLSRSSGQGMTEFKNEVKLIAKLQHRNLVKLIGCCIQEEDRILVYEYMTNGSLDWFIFDDTKSKLLDWPKRFNIICGIARGLLYLHHDSRLRIIHRDLKPSNVLLDDKLNPKISDFGIARIFGGDQIEGNTKRVVGTYGYMAPEYAVDGLFSVKSDVFSFGILLLEIICGKRSRGFYLENDSPNLVTHAWNLWKEGRALQLIDPNIEDSCVLSEILRCIHVSLLCVQQYPEDRPVMPSVFLMLGSDSELAEPKEPGYFVKKDSFAAASNSDGSYKITTNEMTITLLEAR. 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05222 823 SMART serkin_6 506 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05222 823 Pfam PAN-like domain 343 409 IPR003609 -
Seca4g05222 823 Pfam Domain of unknown function (DUF3403) 780 823 IPR021820 GO:0004674
Seca4g05222 823 Gene3D - 21 149 IPR036426 -
Seca4g05222 823 Gene3D Phosphorylase Kinase; domain 1 477 581 - -
Seca4g05222 823 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Seca4g05222 823 SUPERFAMILY Protein kinase-like (PK-like) 492 777 IPR011009 -
Seca4g05222 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 149 - -
Seca4g05222 823 CDD STKc_IRAK 512 777 - -
Seca4g05222 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 581 - -
Seca4g05222 823 Gene3D Transferase(Phosphotransferase) domain 1 582 789 - -
Seca4g05222 823 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Seca4g05222 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 183 IPR036426 -
Seca4g05222 823 Pfam D-mannose binding lectin 74 178 IPR001480 -
Seca4g05222 823 SMART blect_4 32 152 IPR001480 -
Seca4g05222 823 Pfam Protein tyrosine and serine/threonine kinase 507 707 IPR001245 GO:0004672|GO:0006468
Seca4g05222 823 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Seca4g05222 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Seca4g05222 823 CDD B_lectin 32 152 IPR001480 -
Seca4g05222 823 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 768 - -
Seca4g05222 823 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05222 823 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Seca4g05222 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Seca4g05222 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Seca4g05222 823 SMART ntp_6 344 423 IPR003609 -
Seca4g05222 823 CDD PAN_AP_plant 338 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05222 Seca-Chr4 97491118 97495884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05222 443 794 Receptor kinase-like Gene Family AT4G23230 54.062 2.92e-127 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05222 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05222 - - gmx:100775648 1292.33