Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05220 ATGCAAAAGCTAAATTCGATGGATACTCTTTCCTTATTGATAATTGTTGCATGTATACTTATACCTTCTTTCAAAGTTTCAATTGCAGTGGATACTATTCTTCTGTCCCAGTCCATGAGTGATGGCATGACCTTGGTTTCCCAAGGTGGAAAATTTAAACTTGGTTTCTTCAGTCCTGAGAATTCCAACAAACGTTACCTGGGAATTTGGTACAACAATATCCCAATTCAGACTGTTGTTTGGGTTGCAAAGGGTGCCAAAGCCATCAATGATTCCTCTGGCATCTTAACACTGAACAGCACTGGCAACCTTGTCCTCTCACAGCATGACAAGGTAATCTGGTACACAACATCTCAGAAACAAGCACAGAATCCAGTAGCACAGCTCCTGGATTCAGGGAATCTTGTGGTAAGAGATGAGAGTGAAACAAACCCAGAAGCCTATTTGTGGCAGAGCTTTGACTACCCATCTGATACACATCTGCCAGGGATGAAGTTGGGATGGAACCTCAAAACTGGTATGGAATGGAGAATGACATCTTGGAAGAGTCCTGATGATCCATCCCCAGGAGACTTTTATTGGGGTTTATTGCTTCATAATTATCCTGAGTTTTATCTGATGAAGGGAACAAAAAAGTTTGTGAGAATTGGACCATGGAATGGTCAGCATTTTAGTGGCATACCGGATCAAAAGCCCAACACCATTTTTTCTTTCAATTATGTGTCCAATAAGGATGAGATGTTCTACACGTTTAGTCTCAAGAATGATTCTGTAATTTCAAGATTGGTAATGAATCAAACCACTTCTTTGTGTACACGATACGTGTGGATGGAAGATGAACAAATTTGGAAGGTTTATAAGTCACTTCCAAAAGACAATTGTGACATTTATGGCAGTTGTGGAGCCTATGGGAGTTGCATAATTACAGGCTCCCAAATCTGCCAGTGTTTACCAGGGTTCAGTCCCAAGTCACCAGAAGCATGGTACTCATCTGACTGGTCTCAAGGATGTGTCCGCAATAAACCACTGAACTGCACTGACAAACTCAAGGATGGATTTGTGAAGGTGGAAGGTGTAAAAGTGCCAGAAACTACACATACTTGGGTAGATGAGACTATAGGTCTAGATGAATGCAGAGTCAAGTGTTTGAATAATTGTTCTTGTATGGCTTATACTAATTTTAACATAACAGGAGGGGGTAGTGGCTGTGTCATGTGGTTTGATGATCTATTTGATATTAGACAATTTGAAAATGATGGGCAGGATCTGTATATTCGAATGGATGCTTCAGAATTGGGCACTGAGGAACATGATGGGCGCAAGAAGGAGCTGATAGAAATAGCTGCTGTTGCTACAACCATTTTAATTTCAGGGATGCTTTTTCTGGGTTATCGCTACTATATTGTCCAGCGCAGCATAACTGAGGATTCAGAAAGTATAGAACGAGAAGGTGATAGAGGAGGTAACGAGGATGATCTCGATCTCCCATTGCTTGACCATTCAGTAATAGTCACTGCCACTGATAACTTCTCAATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAAGATTAGTATGTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGAAGCTCTGGACAAGGAATGACTGAATTCAAGAATGAAGTAAAACTCATAGCGAAACTTCAGCACCGAAATCTTGTTAAGCTTATTGGTTGTTGCATTCAGGAAGAAGAGAGGATACTGGTTTATGAATACATGACTAACCGTAGTTTGGATTGGTTCATTTTTGATGATACTAAAAGTAAATTGCTAGATTGGCCTAAACGGTTCAACATTATATGTGGGATTGCTAGAGGTCTTCTCTACCTTCATCATGATTCAAGATTGAGGATAATTCATAGAGATCTCAAACCAAGTAATGTTTTACTTGATGACAAGCTTAATCCCAAAATATCAGATTTTGGAATTGCTAGAATTTTTGGAGGAGATCAGACAGAAGGAAATACAAAGAGAGTAGTTGGCACTTATGGCTACATGGCACCAGAATATGCTGTTGATGGTCTTTTTTCAGTAAAATCTGACGTTTTTAGTTTTGGAATTTTGTTGCTGGAGATTATATGTGGAAAGAGAAGTAGAGGTTTTTATCTTGAAAATGACTCTCCTAACCTTGTCACTCATGCATGGAATTTGTGGAAGGAGGGCAGAGCTTTGCAACTGATTGACCCAAACATAGAGGACTATTGTGTTCTATCAGAGATATTGCGTTGCATCCATGTCAGTCTCTTGTGTGTGCAGCAATACCCTGAAGATAGACCTGTCATGCCTTCTGTGCTTCTAATGTTGGGGAGTGACAGTGAATTGACTGAGCCAAAAGAGCCTGGTTACTTTGTGAAGAAGGATTCATTTGCAGCAGCTTCCAACTCAGATGGAAGTTATAAGATCTCAACCAATGAAATGACTATCACCTTATTAGAAGCCCGGTGA 2484 0.4014 MQKLNSMDTLSLLIIVACILIPSFKVSIAVDTILLSQSMSDGMTLVSQGGKFKLGFFSPENSNKRYLGIWYNNIPIQTVVWVAKGAKAINDSSGILTLNSTGNLVLSQHDKVIWYTTSQKQAQNPVAQLLDSGNLVVRDESETNPEAYLWQSFDYPSDTHLPGMKLGWNLKTGMEWRMTSWKSPDDPSPGDFYWGLLLHNYPEFYLMKGTKKFVRIGPWNGQHFSGIPDQKPNTIFSFNYVSNKDEMFYTFSLKNDSVISRLVMNQTTSLCTRYVWMEDEQIWKVYKSLPKDNCDIYGSCGAYGSCIITGSQICQCLPGFSPKSPEAWYSSDWSQGCVRNKPLNCTDKLKDGFVKVEGVKVPETTHTWVDETIGLDECRVKCLNNCSCMAYTNFNITGGGSGCVMWFDDLFDIRQFENDGQDLYIRMDASELGTEEHDGRKKELIEIAAVATTILISGMLFLGYRYYIVQRSITEDSESIEREGDRGGNEDDLDLPLLDHSVIVTATDNFSIKNKIGEGGFGPVYKGRLVCGQEIAVKRLSRSSGQGMTEFKNEVKLIAKLQHRNLVKLIGCCIQEEERILVYEYMTNRSLDWFIFDDTKSKLLDWPKRFNIICGIARGLLYLHHDSRLRIIHRDLKPSNVLLDDKLNPKISDFGIARIFGGDQTEGNTKRVVGTYGYMAPEYAVDGLFSVKSDVFSFGILLLEIICGKRSRGFYLENDSPNLVTHAWNLWKEGRALQLIDPNIEDYCVLSEILRCIHVSLLCVQQYPEDRPVMPSVLLMLGSDSELTEPKEPGYFVKKDSFAAASNSDGSYKISTNEMTITLLEAR. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05220 827 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Seca4g05220 827 Pfam PAN-like domain 347 413 IPR003609 -
Seca4g05220 827 CDD PAN_AP_plant 342 426 - -
Seca4g05220 827 Pfam D-mannose binding lectin 78 182 IPR001480 -
Seca4g05220 827 Gene3D Transferase(Phosphotransferase) domain 1 586 794 - -
Seca4g05220 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Seca4g05220 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
Seca4g05220 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 772 - -
Seca4g05220 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 585 - -
Seca4g05220 827 SMART serkin_6 510 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05220 827 PIRSF SRK 1 827 IPR024171 GO:0004674
Seca4g05220 827 SMART blect_4 36 156 IPR001480 -
Seca4g05220 827 Gene3D Phosphorylase Kinase; domain 1 487 585 - -
Seca4g05220 827 Pfam Protein kinase domain 511 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05220 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 153 - -
Seca4g05220 827 Gene3D - 25 153 IPR036426 -
Seca4g05220 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Seca4g05220 827 CDD B_lectin 36 156 IPR001480 -
Seca4g05220 827 ProSiteProfiles EGF-like domain profile. 290 326 IPR000742 -
Seca4g05220 827 ProSiteProfiles Protein kinase domain profile. 510 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05220 827 ProSiteProfiles PAN/Apple domain profile. 345 428 IPR003609 -
Seca4g05220 827 Pfam Domain of unknown function (DUF3403) 784 827 IPR021820 GO:0004674
Seca4g05220 827 SUPERFAMILY Protein kinase-like (PK-like) 497 781 IPR011009 -
Seca4g05220 827 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Seca4g05220 827 SMART ntp_6 348 427 IPR003609 -
Seca4g05220 827 Gene3D Hepatocyte Growth Factor 344 426 - -
Seca4g05220 827 CDD STKc_IRAK 516 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05220 Seca-Chr4 97475038 97478742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05220 445 798 Receptor kinase-like Gene Family AT4G23230 54.213 1.09e-129 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05220 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05220 - - gmx:100775648 1335.86