Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05219 ATGGCAGCGGCACCACCACCTTGGTTTCTAAAAATGGAACCTTTGAGTTGGGTTTCTTCAATCCTGCTATTGGACAATGGAAATTTAGTACTTAGAGATGAGAAGGACAATAACAATAATGAAGAGAGTTTTCTGTGGCAGAGCTTTGACTATCCTTCTGATACAATGTTACCAGGAATGAAGATTGGATGGGATCGAAAAACTGGTATTAATCGGCGTATTACTGCTTGGAAGAATTGGGATGACCCTTCTCCAGGAGACTTTACTTGGGGCATTGTCCTTACTAGCAACCCTGAAATGGCAATGTGGAAGAACTCAATTGTGTCCTATAGGAGTGGCCCCTGGAATGGCAATCGATTCAGCGGTTCACCTACAATGAGGGATAATCCTGTTTATGACTACAAGTTTGTCAACAATTCAAATGAGCAACCAAAACTTGGAGGCTTTACCATTCTTCACCAAGAGATTATTTGTGATGCTTATAATCTTTGCGGCCCAAATGGGAATTGCGTTTATGGTGAATCACCTATTTGCCAGTGTTTAGATGGATTCAAACCTAAATCTTCCCAAAATTGGGAAGCAATGGACTGGACACAAGGTTGCATGCGGAAGGAATTATGGAGTTGTAGGGTGAAAGGCAAAGATGGATTTCGTAGATTTTCTGGCTTGAAATTGCCAGATACCACACATTCTTGGGTTAATGAAACTATGACACTTGATGAATGTAAGGCCAAATGCTTGGAAAATTGTTCTTGCACTGCTTATTCAAATTCAGATGTGAGAGGGGGAGGAGGTAGTGGCTGTGCCATTTGGTTTGGTGATCTTCTTAATTTGAGAATTATAGAAAGTGGTCAAGATTTATATATTCGAATGGCTTTTTCAGAGACAGATGGAGATGCAAAAGATGGGCATAAAAAAAAGGTTGCGATAGTAATTACAATCACACTTTTATTTGTCCTTGTGCTGCTTTTTGCTCTGTTCTACATTTACAAGACCAAAAGAAAGTACAGAGGGAAAAACTTGCTAAGTGGAGAGAAACATGAAAAGGGACAAGAAGATTTAGGGCTTCCTTTCTTTGATCTTCCTACAATAATTAATGCCACTGATGACTTCTCAATTGATAATAAGCTTGGAGAAGGAGGTTTTGGACCTGTATACAAGGGTATACTAGGAGATCGACAGGAGATTGCCGTGAAAAGACTATTAAGGGCTTCTCGACAAGGTTTACAAGAATTTAAGAATGAAGTTATTTTGTGTGCTAAACTTCAACATCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGAAGAGAAAATGTTGGTTTATGAATACATGCCCAACAAAAGCTTAGATTCCTTTATTTTTGATTTTGGCCTGGCCAGAATATGCGGGGAAGATCAAATTGAAGGGAATACAAGCAAAATAGTTGGTACATATGGTTATATGGCACCCGAATATGCGATTGATGGGCTATTTTCCATTAAATCTGATGTTTTTAGCTTCGGCATTTTATTACTGGAGATTGTAAGCGAAATGAAAAATAAAGGAGTTTCCTTTCCAAGCCATGGTTTTCATCTTATTGGACATGCATGGAAGTTATGGAAGGAGAACACTCCAATAAAATTGATTGATGCTTGTTTACAAGATTCATTGATTCTATCTGAAGCTTATCGTTGCATTCACATTGGCCTTTTATGTGTGCAATATCATCCTCATGATAGGCCAAATATGACATCTGTGGTTGTAATGTTGAGTAGTGATACTGCTTTGCCAGAACCAAAAGAGCCCCACTTCTTGTTAGAAAAAGGCCCAATTGAAGGAGAATCTTCATCTGCGAAGTTAACATCTTCAACGAATGATGTAACTATTTCACTATTAGAAGCTAGATAA 1896 0.3845 MAAAPPPWFLKMEPLSWVSSILLLDNGNLVLRDEKDNNNNEESFLWQSFDYPSDTMLPGMKIGWDRKTGINRRITAWKNWDDPSPGDFTWGIVLTSNPEMAMWKNSIVSYRSGPWNGNRFSGSPTMRDNPVYDYKFVNNSNEQPKLGGFTILHQEIICDAYNLCGPNGNCVYGESPICQCLDGFKPKSSQNWEAMDWTQGCMRKELWSCRVKGKDGFRRFSGLKLPDTTHSWVNETMTLDECKAKCLENCSCTAYSNSDVRGGGGSGCAIWFGDLLNLRIIESGQDLYIRMAFSETDGDAKDGHKKKVAIVITITLLFVLVLLFALFYIYKTKRKYRGKNLLSGEKHEKGQEDLGLPFFDLPTIINATDDFSIDNKLGEGGFGPVYKGILGDRQEIAVKRLLRASRQGLQEFKNEVILCAKLQHRNLVKVIGCCIEGEEKMLVYEYMPNKSLDSFIFDFGLARICGEDQIEGNTSKIVGTYGYMAPEYAIDGLFSIKSDVFSFGILLLEIVSEMKNKGVSFPSHGFHLIGHAWKLWKENTPIKLIDACLQDSLILSEAYRCIHIGLLCVQYHPHDRPNMTSVVVMLSSDTALPEPKEPHFLLEKGPIEGESSSAKLTSSTNDVTISLLEAR. 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05219 631 ProSiteProfiles EGF-like domain profile. 154 190 IPR000742 -
Seca4g05219 631 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 577 - -
Seca4g05219 631 Pfam PAN-like domain 209 277 IPR003609 -
Seca4g05219 631 ProSiteProfiles Protein kinase domain profile. 371 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05219 631 Gene3D Phosphorylase Kinase; domain 1 344 442 - -
Seca4g05219 631 Pfam S-locus glycoprotein domain 110 143 IPR000858 GO:0048544
Seca4g05219 631 Pfam S-locus glycoprotein domain 157 188 IPR000858 GO:0048544
Seca4g05219 631 ProSiteProfiles PAN/Apple domain profile. 209 292 IPR003609 -
Seca4g05219 631 Pfam Protein tyrosine and serine/threonine kinase 372 456 IPR001245 GO:0004672|GO:0006468
Seca4g05219 631 SUPERFAMILY Protein kinase-like (PK-like) 356 601 IPR011009 -
Seca4g05219 631 Gene3D Hepatocyte Growth Factor 208 290 - -
Seca4g05219 631 Gene3D Transferase(Phosphotransferase) domain 1 443 589 - -
Seca4g05219 631 SMART ntp_6 212 291 IPR003609 -
Seca4g05219 631 CDD PAN_AP_plant 208 292 - -
Seca4g05219 631 Pfam Domain of unknown function (DUF3403) 587 631 IPR021820 GO:0004674
Seca4g05219 631 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 446 - -
Seca4g05219 631 SUPERFAMILY alpha-D-mannose-specific plant lectins 19 83 IPR036426 -
Seca4g05219 631 Pfam D-mannose binding lectin 21 78 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05219 Seca-Chr4 97459910 97472504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05219 320 631 Receptor kinase-like Gene Family AT4G23150 39.733 2.59e-77 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05219 PK_Tyr_Ser-Thr 5.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05219 - - gmx:100776310 719.539