Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05218 ATGAGACTAGCAGGGGCATACTCAGGCTTGCTTAGTGGTGGAACTGGGTCTCATTCTTTGCCGTTGGCAAGGATCAAGAAGATAATGAAGAAGTCTGGTGATGAAGTGAAGATGATATCGGGTGAAGCTCCCATAGTTTTCTCCCAGGCTTGTGAGCTGTTCATTGAGGAACTAGCCAGAAGGTCGTGGAATATGACCATCCAAGGCAAAAGGAGAACTTTACACAAAGAGGACGTGGCCTCTGCTGTTATAGCCACTGATCTCTTCGACTTTTTGATTACTTTAGTTTCGGATTCCGACAGGGCAACTCTCTTAGGCAACGGTATTGGGGACACCATCGCAGCCACCAACTTCCATGGCTAG 363 0.4766 MRLAGAYSGLLSGGTGSHSLPLARIKKIMKKSGDEVKMISGEAPIVFSQACELFIEELARRSWNMTIQGKRRTLHKEDVASAVIATDLFDFLITLVSDSDRATLLGNGIGDTIAATNFHG. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05218 120 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 99 - -
Seca4g05218 120 Gene3D Histone, subunit A 12 97 IPR009072 GO:0046982
Seca4g05218 120 FunFam Nuclear transcription factor Y subunit C 8 98 - -
Seca4g05218 120 SUPERFAMILY Histone-fold 15 92 IPR009072 GO:0046982
Seca4g05218 120 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 83 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05218 Seca-Chr4 97408779 97409141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05218 17 110 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.053 5.82e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca4g05218 CBFD_NFYB_HMF 4.7e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05218 - - ccaj:109817175 152.525