Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05207 ATGATTGAAAGGGATGGTTCTGCCAAGGGGATCGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATTAACTACTCCCTGCACAAGTCAGGTGTGTCTTGCGTTCAATTGAATGGGAGCATGACCTTGGCTGCTCGGGATGCTGCTATTAAGAGATTTACTGATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACATGTGAGTAATCTCCTTTTGCATGTTTATGTCAACCTTACGGTTTTCCTTATGGACCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATTGAAAACACAATAGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAACTGGTATTTGAAGGGACTGTAGGCGGCTCTTCTGAGGCTCTGGGGAAATTGACGGAGGCTGACTTGAAATTTCTCTTTGTCACCTAA 522 0.4425 MIERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMTLAARDAAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVSNLLLHVYVNLTVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLKFLFVT. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05207 173 Pfam Helicase conserved C-terminal domain 7 117 IPR001650 -
Seca4g05207 173 CDD SF2_C_SNF 4 128 - -
Seca4g05207 173 Gene3D - 2 171 IPR027417 -
Seca4g05207 173 SMART helicmild6 21 117 IPR001650 -
Seca4g05207 173 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 7 171 - -
Seca4g05207 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 171 IPR027417 -
Seca4g05207 173 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 163 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05207 Seca-Chr4 97355740 97358067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05207 1 173 RAD5 or RAD16-like Gene Family AT1G05120 77.457 7.48e-93 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05207 K15083 - gmx:100798333 301.982