Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05200 ATGGGGGTGATTAAGGCAGCCATTGGAGATGCAATTTTGACATCAATATTTGTTTTCTGTATCTCAAGTATGAGGTTTCTAACAACCAAGACAGCTGTTTTTCTTGGTCTTCAACCTGTTTCACTTGCAGGCCTCTTCATCACCACCATCATAAACACAATCATTGTCCTAACCATAAGTTTAATTGGCAGACTCTTAGGTGGTGCTAGCTTCAACCCCTCAAGCACTATTTCCTTCTACACTGCAGGACTCAGGCCTGATTCATCTCTTGCGACCATGGCTGTTAGATTTCCTGCTCAGGCAGCAGGTGGAGCTGTTGGAGTTAAGGCTATTCAGCAAGTGATGCCAACCCAGTACAAGCACTTGCTGAAAGGACCTTCCTTGAAGGTGGATTTGCATACAGGAGCTATAGCAGAGGGGGTGTTGAGTTTTACTCATAACTTAACTATCCTCTTTATCATGCTTAGGGGTCCTAAAAACCCATGGTTGAAAGTGTATTTGCTTTCTGTGGCAACGGTGATTTTGGTTATTCCAGGTTCTGTGTACACAGGGCCTTCCATGAACCCAGCCAATGCCTTTGGATGGGCCTATTTGGACAACAAGCACAATACATGGGAGCAATTTTATGTCTATTGGATATGTCCTTTATTAGGTGCAAGCTTAGCTGCTTTGGTCTATAGGTTTCTATTTATGTCACCACCAACTAAGCAGAAGAAAGCATGA 723 0.4343 MGVIKAAIGDAILTSIFVFCISSMRFLTTKTAVFLGLQPVSLAGLFITTIINTIIVLTISLIGRLLGGASFNPSSTISFYTAGLRPDSSLATMAVRFPAQAAGGAVGVKAIQQVMPTQYKHLLKGPSLKVDLHTGAIAEGVLSFTHNLTILFIMLRGPKNPWLKVYLLSVATVILVIPGSVYTGPSMNPANAFGWAYLDNKHNTWEQFYVYWICPLLGASLAALVYRFLFMSPPTKQKKA. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05200 240 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g05200 240 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g05200 240 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g05200 240 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g05200 240 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g05200 240 PANTHER AQUAPORIN SIP1-1 1 238 IPR044222 GO:0015250
Seca4g05200 240 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g05200 240 SUPERFAMILY Aquaporin-like 2 234 IPR023271 -
Seca4g05200 240 Gene3D Glycerol uptake facilitator protein. 2 239 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05200 Seca-Chr4 97259743 97260465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05200 1 230 Major Intrinsic Protein MIP AT3G04090 45.690 1.12e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05200 K09875 - gmx:100797126 345.895