Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05196 ATGGTGATCCATAAAAATGTCACGAATGAGAATGAAGGGTCATCAAAAGAAGAGGAGAATGATAATAAGGTGAAAGAGAAAATGAAGAAAGGGTCGTGGACGGCAGCAGAAGATGCTATATTGAGAGAATATGTGATGAAGAATGGTGAGGGAAACTGGAACTCGGTGCAGAAGAATTCGGGGTTGGGAAGGTGTGGAAAAAGTTGCAGGTTGAGATGGGTTAACCATTTAAGGCCTAACTTAAGTAAAGGTCCATTTTCAAACGAGGAAGAGAAAATCATCATTCTTCTTCATGCTAAACAAGGAAACAAATGGGCTCAAATGGCCGCACAGTTACCTGAGAGGACAGACAATGAAATAAAAAACTTTTGGAATACCAGAATGAAAAGGTGCCAAAGAGCAGGGTTGCCTCTTTATCCTCCAGAAGTCCTAAATGAAGCCAACACATTCCATATACAGGAGAAGGAGTACTTTACACAACTCCAATCTTCCCCATCCTTATCGTTTTCTCCATTCCTATCTTCAAATCCCCAACAAAAGGAACTCAATTCCAATTCTTCTTACTACACCAATCCATACCCTCAGTTCAATTTTCCCAATATGAAGAGTGGATATTCTGAAAACATGGTTTTCCCATCATCCTCTGTTTCTTCACATGGGCATCCTTTGTTTAACCAGTGTTTTGCCGCAAACGAGTCAAGTGATTATCACTCTGGGAGCTTCAATCATGGTTTTGAATTTGATACCAGTACTGCCATGGCAGGATCCCCATATGAATCTTTTCCTCTGGTGCAATGCTCAAACACTGAAGCTTGTTCGAGCCAATCAGCACCTGGATCCACCACCCCTGCTTCATCCAACGCTAGTGGTGTTTATGGCTTGATGGGAGGTTCAAGCATGGCTAATGGCTATCATGAAGGTGAATCATTATCACCTCATAGAAACAGTGGCCTTTTGGATGCTCTAGTGATGGAGGCTCAAAGCCTTTCTCGCAATGATAACAAGTCAAAGAGTGAGTGTGAGGATTCAACTACAGCAGAAGGAGAGTTATCTTGTAAGAGGAAAAGCATGATAGCTAAGGAATATGATGAAGAGGATGAACAAGTGCTTGTGGAGACAACTATGGAGAACAGTGACAACAATACTAATAAGAAACAGAGGATTGATAAAGGGAAGAAACCAATTGTTGAGGAGGAGTCATTGGAGGGGATGGATTACGTGGATGATGACTTATTTAGTATGCTCAACAACTTTCCCTTAGAAATGTCAGTGCCTGGATGGTACCGTGGTGGAGAAAGACAATCATTGGGACTTGAAACTCAACAAGATCCTTCATCTTCATCTGGCCTTAGTGATGAGGAATTGGCTTGGACTCTTGGTACTTTTTGGAGCAATATGCCTAACATGTGCTAA 1413 0.4176 MVIHKNVTNENEGSSKEEENDNKVKEKMKKGSWTAAEDAILREYVMKNGEGNWNSVQKNSGLGRCGKSCRLRWVNHLRPNLSKGPFSNEEEKIIILLHAKQGNKWAQMAAQLPERTDNEIKNFWNTRMKRCQRAGLPLYPPEVLNEANTFHIQEKEYFTQLQSSPSLSFSPFLSSNPQQKELNSNSSYYTNPYPQFNFPNMKSGYSENMVFPSSSVSSHGHPLFNQCFAANESSDYHSGSFNHGFEFDTSTAMAGSPYESFPLVQCSNTEACSSQSAPGSTTPASSNASGVYGLMGGSSMANGYHEGESLSPHRNSGLLDALVMEAQSLSRNDNKSKSECEDSTTAEGELSCKRKSMIAKEYDEEDEQVLVETTMENSDNNTNKKQRIDKGKKPIVEEESLEGMDYVDDDLFSMLNNFPLEMSVPGWYRGGERQSLGLETQQDPSSSSGLSDEELAWTLGTFWSNMPNMC. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05196 470 Gene3D - 29 82 - -
Seca4g05196 470 MobiDBLite consensus disorder prediction 329 349 - -
Seca4g05196 470 MobiDBLite consensus disorder prediction 332 349 - -
Seca4g05196 470 Gene3D - 85 131 - -
Seca4g05196 470 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Seca4g05196 470 CDD SANT 32 77 IPR001005 -
Seca4g05196 470 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 440 - -
Seca4g05196 470 Pfam Myb-like DNA-binding domain 33 92 - -
Seca4g05196 470 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Seca4g05196 470 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Seca4g05196 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 132 IPR017930 -
Seca4g05196 470 CDD SANT 85 126 IPR001005 -
Seca4g05196 470 SMART sant 29 79 IPR001005 -
Seca4g05196 470 SMART sant 82 130 IPR001005 -
Seca4g05196 470 MobiDBLite consensus disorder prediction 10 30 - -
Seca4g05196 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 81 IPR017930 -
Seca4g05196 470 MobiDBLite consensus disorder prediction 382 396 - -
Seca4g05196 470 FunFam MYB-related transcription factor 29 82 - -
Seca4g05196 470 MobiDBLite consensus disorder prediction 1 30 - -
Seca4g05196 470 MobiDBLite consensus disorder prediction 373 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05196 Seca-Chr4 97114983 97118294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05196 24 143 MYB Transcription Factor Family AT2G32460 77.500 5.37e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05196 Myb_DNA-bind_6 4.3e-14 CL0123