Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05174 ATGGAATGCAGAAACGAACAAGGACAGGTTGTTATACCTGTCTTCTATCAAACAGATCCATCATGTGTGCGGAAGCAGACAGGGAGTTACGAGGCAGCATTCGCAAACCATGAATGTAATCTCGGTAACCAAGACAAGGTGCGTAGGTGGAGAACTGCTCTCACTCAAGCAGCCAATATATCCGGATGGGACTCTCGAACCCATAGGGATGACTCTCAAGCCATCCACAACATTGTCAATGATGTTTTGCAAAAGCTATACTTCTTGAACCCTAATGAACTAAAAGGCATTGTTGGGATTGATGAAACCATACAGCACCTTGAATTATCACTGAAAAGCGTTCGAGCAATTGGAATCTGGGGTATGGGTGGTAAAGGTTTGTTTGCCAAACTCTTTCCTCAATATGACAGTGTCTGCTTCATGCCAAATATAAGTGAAGAATCGAAAAGGATAGGACTAACATCTTTACGTAATAAGCTTTTCTCTGAGCTGCTGAAGGAAGAAATTCCCCTGTTTGATGTTGTAGGATCCACGGTCATTATGAGGAGGCTTGGAAGTAAAAGGGTTTTACTTGTACTCGATGATGTAGATAGTTTTGAGCAGTTAGAATGTTTGTGTGGAGAACGCGGTGATCTTGGAGAAGATATTACACTGATTGTAACAACAAGAGATAAGCACTTGCTTAGTGGAAGAGTTGATGAGATATATGAGGTCAACCAAAGGAGCTTTGAAGAATCTCGAGAGCTTTTTTGCTTACATGCCTTCAAGACAAGGCATCCCCAAGAAGGATATGAGGGACTCTCAAACAGGGCAATCCATTATGCAAAGGGCATTCCATTAGCTTTAAAAGTTTTGGGTTCACATCTCTACTCCAGAAATCGTGAATTTTGGAAAAGTACACTGAGAAAACTTGACAAGTATCCCAATGAGAAAATTTTGAACGTGTTAAAAGTTAGTTATGATGGATTAGACAGTCTAGAAAAGAAAATATTTCTAGACATTGCATTCTTTTTCAAAGATAAAGATAAACATCAGGCTGTATGGATACTAGATGCCTGTGGTTTTTTTGCAGTTAGTGGATTAGACATCCTTATAGATAAATCTCTGGTAACTATTTCACATAACAACACCATACAAATGCATGATTTATTACAAGAAATGGGTTGGGATATAGTTCGTAAAGAATGCTGGGGAAACCCTGGAAGACGTAGCCGATTGAGGGCTAATGAAGCTTATGATGTACTTAATAATAACAAGGGCACTGATGTAGTTGAAGTAATAACATTAGATTTGTCTCAAATAGTAGATTTACAATTGAGTGCTGACACATTCAACAGGATGCCTAATTTAAGATTTCTTCAATTATATGTCCCCGGGGGCAAGAGATCAGGTACTTTGTACCACTGTAGAGTTCTTGAGGCATTTTCTGATGAATTGAGGTATTTTGAGTGGGATGGATTCCCTTTATCATCTCTTCCACCAAATTTTTGTGCTCAGCATCTTGTTGTGATTCGTATGCCACATAGCCATGTTAAAGAACTTTGGCAGGGGGTGCAGGATCTTGTGAATTTAGAGGCAATTGACCTACGCGAATGCAAACAGTTGGTAAAGCTTCCAGATTTGTCTAGGGCGTCAAAGCTTGTATTGGTGAATCTCTATGGTTGTGAAAGCTTGTCTGATGTTGATCCATCTGTTTTGTCTCTCGAAGCACTTGAATCTCTGATACTGGATAACTGCATAAAATTGAAGAGTCTAACAAGTAAGAAGCATTCAAAATCACTAATGAAAATTAGTGTCAATGGTTGCATAGGGCTCGAGGAATTTTCAGTGTCGTCCCACTTAATTGAAAGGTTGGATTTTAAGCAATACAGGAGTCAAAATATTGCACTCATCAATAGGTTGTCTAAGCAAGCTTGTGTGGCTGAATCTAGAAGGCTCAAAGCTACAGTATCTTCCAGATGA 1962 0.394 MECRNEQGQVVIPVFYQTDPSCVRKQTGSYEAAFANHECNLGNQDKVRRWRTALTQAANISGWDSRTHRDDSQAIHNIVNDVLQKLYFLNPNELKGIVGIDETIQHLELSLKSVRAIGIWGMGGKGLFAKLFPQYDSVCFMPNISEESKRIGLTSLRNKLFSELLKEEIPLFDVVGSTVIMRRLGSKRVLLVLDDVDSFEQLECLCGERGDLGEDITLIVTTRDKHLLSGRVDEIYEVNQRSFEESRELFCLHAFKTRHPQEGYEGLSNRAIHYAKGIPLALKVLGSHLYSRNREFWKSTLRKLDKYPNEKILNVLKVSYDGLDSLEKKIFLDIAFFFKDKDKHQAVWILDACGFFAVSGLDILIDKSLVTISHNNTIQMHDLLQEMGWDIVRKECWGNPGRRSRLRANEAYDVLNNNKGTDVVEVITLDLSQIVDLQLSADTFNRMPNLRFLQLYVPGGKRSGTLYHCRVLEAFSDELRYFEWDGFPLSSLPPNFCAQHLVVIRMPHSHVKELWQGVQDLVNLEAIDLRECKQLVKLPDLSRASKLVLVNLYGCESLSDVDPSVLSLEALESLILDNCIKLKSLTSKKHSKSLMKISVNGCIGLEEFSVSSHLIERLDFKQYRSQNIALINRLSKQACVAESRRLKATVSSR. 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05174 653 Gene3D Ribonuclease Inhibitor 414 619 IPR032675 -
Seca4g05174 653 SUPERFAMILY L domain-like 425 625 - -
Seca4g05174 653 Gene3D - 1 86 IPR035897 -
Seca4g05174 653 Pfam TIR domain 1 87 IPR000157 GO:0007165
Seca4g05174 653 Pfam NB-ARC domain 117 313 IPR002182 GO:0043531
Seca4g05174 653 FunFam Disease resistance protein (TIR-NBS-LRR class) 242 324 - -
Seca4g05174 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 334 IPR027417 -
Seca4g05174 653 Pfam Leucine Rich Repeat 500 519 IPR011713 -
Seca4g05174 653 Gene3D - 87 235 IPR027417 -
Seca4g05174 653 SUPERFAMILY "Winged helix" DNA-binding domain 311 396 IPR036390 -
Seca4g05174 653 Gene3D - 242 324 IPR042197 -
Seca4g05174 653 ProSiteProfiles TIR domain profile. 1 86 IPR000157 GO:0007165
Seca4g05174 653 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 616 IPR044974 GO:0006952
Seca4g05174 653 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 63 IPR035897 -
Seca4g05174 653 PRINTS Disease resistance protein signature 183 197 - -
Seca4g05174 653 PRINTS Disease resistance protein signature 275 289 - -
Seca4g05174 653 PRINTS Disease resistance protein signature 116 131 - -
Seca4g05174 653 PRINTS Disease resistance protein signature 519 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05174 Seca-Chr4 96702560 96706375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05174 1 624 WRKY Transcription Factor Family AT4G12020 29.508 9.31e-73 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05174 - - ccaj:109795381 654.055