Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05165 ATGGAGGCTACCAATGGCTTTTCATTTGAAAACAAGTTAGGACGGGGAGGCTTTGGACCTGTTTTTAAGGGGATTTTATCTTCAGGGCAAGAAGTTGATGTGAAAAAGCTTTCAAAAACTTTTGGACAAGGAGTTATTGAATTTAAAAGCGAATTAACACTCATATCTAAGCTCCAGCACACAAATCTCGTTCAGCTACTCGGTCACTGCATTCATGAACAAGAGAGGATGTTGGTCTATGAGTATATGCCAAACAAAAGCTTGGACTTCTTTTTATTTGTTTGGTGCTCCCTTTGCTGTTGGAGTTGA 309 0.3948 MEATNGFSFENKLGRGGFGPVFKGILSSGQEVDVKKLSKTFGQGVIEFKSELTLISKLQHTNLVQLLGHCIHEQERMLVYEYMPNKSLDFFLFVWCSLCCWS. 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05165 102 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 93 - -
Seca4g05165 102 SUPERFAMILY Protein kinase-like (PK-like) 3 96 IPR011009 -
Seca4g05165 102 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 1 82 - -
Seca4g05165 102 Pfam Protein tyrosine and serine/threonine kinase 8 92 IPR001245 GO:0004672|GO:0006468
Seca4g05165 102 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Seca4g05165 102 ProSiteProfiles Protein kinase domain profile. 7 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05165 Seca-Chr4 96467364 96469476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05165 3 93 Receptor kinase-like Gene Family AT4G11530 64.835 6.02e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05165 PK_Tyr_Ser-Thr 3.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05165 - - lja:Lj3g3v0392840.1 164.466