Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05164 ATGGTTTATAATCTCGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAAGAAATAGAGGAGTATTGGACTTCAAGATACTCGACTAGCGAATGA 114 0.4211 MVYNLVGERWSLIAGRIPGRTAEEIEEYWTSRYSTSE. 38
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05164 37 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 37 IPR017930 -
Seca4g05164 37 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 2 34 - -
Seca4g05164 37 Gene3D - 1 33 - -
Seca4g05164 37 Pfam Myb-like DNA-binding domain 4 30 IPR001005 -
Seca4g05164 37 CDD SANT 9 29 IPR001005 -
Seca4g05164 37 SUPERFAMILY Homeodomain-like 3 33 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05164 Seca-Chr4 96460998 96461547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05164 2 31 MYB Transcription Factor Family AT5G35550 63.333 3.07e-10 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g05164 Myb_DNA-binding 7.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05164 - - var:108340066 77.4109