Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05163 ATGTCTGAATTGGACGTACAAATCCCAACTACTTTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGGACAAAAGAGTATGTTCATGTTCGTGTACAACAGCGTAATGGAAGGAAAAGCCTAACAACTGTTCAAGGATTAAAGAAAGAGTACAGCTATACCAAGATACTCAAGGACTTGAAGAAAGAATTCTGCTGTAATGGTACTGTTGTCCAGGACCCTGAGTTGGGCCAGGTCATACAACTCCAGGGAGATCAAAGAAAGAATGTTTCTACTTTCCTTGTGCAGGCGGGCATAGTAAAGAAGGAGCATATCAAGATTCATGGTTTCTAA 342 0.424 MSELDVQIPTTFDPFAEANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05163 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
Seca4g05163 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Seca4g05163 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Seca4g05163 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 6 113 - -
Seca4g05163 113 Gene3D - 1 113 - -
Seca4g05163 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Seca4g05163 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
Seca4g05163 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Seca4g05163 113 NCBIfam translation initiation factor SUI1 5 113 IPR005874 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05163 Seca-Chr4 96456306 96457580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05163 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 92.035 8.68e-77 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05163 K03113 - qsu:111988426 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05163 4 96456306 96457580 Seca4g05163 4 96456306 96457580 ECH