Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05151 ATGGATCCTTTATGTGAGTTATGTGGGGTTGTAAGAGCTGTCGTTTACTGCAAGCCTGATTCTGCTCGTCTCTGTTTGGATTGCGATGTATGTGTGCACGCTGCTAATGCTTTATCTTGTAGGCATCCTCGTTATCCCCTGTGTGGCAAGTGTAATTGCCAACCAGCAATTGTCCACTGCTTGGACAATAAATTGTCTTTATGTCAATGTTGTGACTGGGACCAACATAACTGTTTGTTGTTGGGACACAAGCATCAAACTTTGAATTGCTATACGGGTTGTCCCTCTTTTACTGAGTTTCCGATGTTATTGTCCTATGTGCTTGATGCTACTTCCTCAGATGGCTCAGATCATGGTGGGGGATCACTTAATACATTGCAAAAAAATGATAGTTGCATTAGCAAGTGTTTGGAGCAGCTCGAAAATGGTAGCTCATTTGATTTGGTGAGTAACAAGTTGAATGAAAAAGAACCATGTGCCAAATATGAACCATGGATGGAGCAAGCTTCCACTATTCCATCAAATCCAAATTACAAGAACATATCAAAGGAACATTCAAATGTTAATGATCTACTAATGCATGATGAAGATGATCTCAGCATGGAGAGTATTCTAATTAACTTTGAAAATAGTGCTGAAATGTTTGATTGTTCTCAAATTGCCACAAAAAACCACTTTGATAATGGAGGAATGGGTTGTGAGTTAAAGGAAAACAACATATCAATTTCAGAATCTAATACTCTCATTAAGAGTGTCATGGAGGAATCATCACCAATCCATCATGACTATGAGGCATTTCAGTCATTCAGGACTAGTGACTCAACTAGTGTAATGTTGGGACTCAATGGTAACACAAATTGTGTACTTATGCATCCATGCTTCAATGACAACATCAACAAAGGATTTCCTCAAGGCCAAGACTATTCAAGCATATCTCTTTCATTACCAAAAATCAATGGTGAAATTAATGGCACTGATTATCAAGATAGTGAATTACCACCAATGTTTATGGTAGGAGAATCCCCATGGGAATCAAATTTGGAGGGTACATGCCCACAAGCCAGGGAGAAGGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAAGGTTTGGTAAGCAAATAAGGTATGCATCTCGCAAAGCAAGGGCCGATACAAGAAAACGCGTGAAAGGTAGATTTGTGAAAGTAAATGATGCAAGTGATTGTGATCCTCAAGGGGCAGGGGACTTCTAA 1236 0.3916 MDPLCELCGVVRAVVYCKPDSARLCLDCDVCVHAANALSCRHPRYPLCGKCNCQPAIVHCLDNKLSLCQCCDWDQHNCLLLGHKHQTLNCYTGCPSFTEFPMLLSYVLDATSSDGSDHGGGSLNTLQKNDSCISKCLEQLENGSSFDLVSNKLNEKEPCAKYEPWMEQASTIPSNPNYKNISKEHSNVNDLLMHDEDDLSMESILINFENSAEMFDCSQIATKNHFDNGGMGCELKENNISISESNTLIKSVMEESSPIHHDYEAFQSFRTSDSTSVMLGLNGNTNCVLMHPCFNDNINKGFPQGQDYSSISLSLPKINGEINGTDYQDSELPPMFMVGESPWESNLEGTCPQAREKAKMRYNEKKKTRRFGKQIRYASRKARADTRKRVKGRFVKVNDASDCDPQGAGDF. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05151 411 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca4g05151 411 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Seca4g05151 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 400 - -
Seca4g05151 411 CDD Bbox1_BBX-like 4 47 - -
Seca4g05151 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca4g05151 411 Pfam CCT motif 355 397 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05151 Seca-Chr4 96221101 96223941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05151 1 405 C2C2-CO-like Transcription Factor Family AT3G21880 36.058 1.63e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g05151 CCT 7.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05151 - - gmx:100804738 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05151 4 96221101 96223941 Seca4g05151 4 96221101 96223941 ECH