Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05144 ATGTCAAGTAAGAGTGCAAAAAATCTTATAAGGGTGATTGGTTTTCTGTATATTATTGGAATGAGAAAAGATGACATTGCACACATTTTGTCCAACCACATGCACCTCCTGTGCAAACATTCATGGAAAGGTCATAAAACTGTTTGTGAGGAGTTAAACATTGGAAAAGCTGATTTATGCCAAATCATAAAGGATGATCCGTTAAAGCTAATTAGTTTGACTTTAAAACTGGAACAGAAGAGCAATGAACGGGTATTCTGTCATGACCCACGAAATTATTTGGAAAAAACTGCTTTCTTGCTGAAACTGGGGTATACTGAGAACTCTGAAGAGATGGCAAAAGCATTAAAAATGTTTCGAGGGAGAGGTGATCAATTACATGAGAGATTTGATTGCCTAGTAGAAGCTGGTTTGGATTACAACAGTGTAATTGAAATGATAAAACGAGCTCCTATGATTCTAAACCAGAAAAGAAGTATAATTCAAAAGAAGATTGATTTTGTAAAAAAATTAAATTACCCAGTAGAATGTCTCGTGAGATTCCCATTATACTTTTGTCATGATTTGGAGAAAATTATTGAAAGATTTTCAACGTATGAGTGGCTGAAGGAGAGGAATGTGGTTAATCCTGATATGACCGTAAGTTGTCGAAATTCACTTTGGTCCCTTTGA 672 0.3512 MSSKSAKNLIRVIGFLYIIGMRKDDIAHILSNHMHLLCKHSWKGHKTVCEELNIGKADLCQIIKDDPLKLISLTLKLEQKSNERVFCHDPRNYLEKTAFLLKLGYTENSEEMAKALKMFRGRGDQLHERFDCLVEAGLDYNSVIEMIKRAPMILNQKRSIIQKKIDFVKKLNYPVECLVRFPLYFCHDLEKIIERFSTYEWLKERNVVNPDMTVSCRNSLWSL. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05144 223 SMART mt_12 144 174 IPR003690 GO:0003690|GO:0006355
Seca4g05144 223 SMART mt_12 175 208 IPR003690 GO:0003690|GO:0006355
Seca4g05144 223 Pfam mTERF 4 208 IPR003690 GO:0003690|GO:0006355
Seca4g05144 223 Gene3D Transcription termination factor 3, mitochondrial 1 218 IPR038538 -
Seca4g05144 223 PANTHER CGI-12 PROTEIN-RELATED 6 207 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05144 Seca-Chr4 96084114 96084785 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca4g05144 mTERF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05144 - - gmx:100803162 320.472