LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g05121	ATGGAATTGACAAGACCTGGTTATGCGGTTATTTATGTCATTCTCCTTTGCGCGTTAGCTAAAGGGGGCTCAGAGGGGAAGAGTGGGAAGGAAGAGGAGTTTTCTAGCTATTGTGGGGCTTTATCATCGTCCCTTCGTTTACAAGGAAAACAGGTTATGCTGAATGGTTACTATTCTCTCATTTGGTTGATACAGGCAGAGAATGTGTGGAAACATTGCAGGAAAGAATTGATAGAGAGGAGCAATGATGGTAAAAATTTTGACTTGCATCAACTTGAAGGGAGAATTGACACTAGGTCTATTCTTTCAATAGAAAATAACATAAAAAAAACAACAAAGTCCCTACCTCCCCATGTGAAGAAAAAGGTTTTGGAGGGCTTAAGAACCGGCACTCTTCATGCTCCTGATTCTGAAGAGAAGGCTGGCTCTAGATACTTATTGACAAAGCATTCTAGATCAACCTTGGGTTTGGAAAGTGGTCATCATGGAAGAACTTTGATTGCTGAGTCACCACAGAATGCAATGCCACCAAGCCCTGCTACTACTGTTCCATCCCCCGGGCATGCATCTGAATCACCAACACCAGCCAAATCTCCACCATCACCAACTCCTGGTCCCACTTCAGTGAATTTACCACTCCCTCCAGATATGTTTGTGCCATTTCCACCACCACCACCACCACGTTCACCTCGTTCTCCTCCTCAAAGTTTACGACCTATAATATATGCTCCTTATCCTTCACCTCATAACAATGATGACAGTACAAAGAATACAATTATTTTAGGTGCCATTTTATGTGGCATTATAATCTTGATAGGCTTATTCCTCTGTTTTCGTGAGGCTAGAAAAAACAAAGCTGACAAAGATGACAGGCCTTTACTAGTATTAACCTCAAGTGATTATTCTGGTGGTGCACAGAAGGTTGTTCGTTTGGGAAATGCTGATAAGGAAGAATATGGTATTAGCAATGAAAAGAACCCTTCTAATTTTAGAAACAAGTCCATTAAGGCTGGATTTAACAATACCTCAATGGTTGAGACAAAATCATCACAAGGTATGGGACAAGTACCAGGACCTCCTAATGGAGGACCAGCCCCTCCTCCACCTCCTGGTCCACCGCCACCGCCACCTCCACGGGCACCTCCACTTGCTCCTCGTCCCCCACCACCTCCAAAAGCGGGTCATCCTCCACCTGCTCCTCCCAAGCCAACTGCAGGTAAAAACCAAGGACCACTTCGTTCTAAAGAGGGAGGTGCTAGTGAGGGTGATGCACCAAAACCTAAACTAAAACCATTTTTCTGGGACAAGGTTGCTGCAAAACCTGATCAATCAATGGTCTGGCATGAGATCAATGCAGGGTCATTCCAGTTCAATGAGGAAATGATGGAGTCTTTATTTGGCTGCGCCAACCAGAACAGAAATGAACGCAGAAAAGATTCACCTTCTGTAGATACTTCAGTACAGTATATTAAGATTATTGAACCTAAGAAAGCACAGAATTTGTCAATTCTTTTGCGAGCTCTGAATGTGACAACAGAAGAAGTTGTCGATGCTCTTAACGAAGGTAACGAGATTCCCATCGAGCTCATCCAGACTTTGTTGAAGATGGCACCAACACAAGAAGAGGAACTGAAGCTTAGATTATTCTCAGGAGAACTGACTCAACTAGGCCCAGCAGAGAGGTTTCTCAAAGTTTTAGTCGACATTCCATTCGCTTTCAAACGTCTCGAATGTCTCATGTTCATGTTTATCCTTCGAGAAGAGGCCTCAAGCATTAAGGAGTCCTTTGAAACATTAGAGGTTGCAAGCAACGAGCTGAGAAAAAGCAGGTTATTCTTAAAACTACTAGAAGCAGTTCTGAAAACTGGTAACCGCATGAATGATGGTACCTACCGTGGTGGTGCTCAAGCATTTAGGCTTGACACACTTCTGAAACTATCAGATGTGAAAGGAACAGATGGCAAGACCACACTGTTACACTTTGTGGTTCAGGAAATCATACGTTCAGAAGGGATAAGAGCTGTGAGAACTGAGAGAGCAAGCAGAAGCATTTCCAGCGTGGGAACAGAGGATCTTGATGATGGAAATGAAGAATCCGAAGAACACTACCGCAGCCTTGGCCTTCAGGTAGTTTCAGGTCTAAGCACTGAGCTTGGAGATGTCAAAAAAGCAGCACTCATAGATGGCGATGCACTCAGCAATGCAGTGTCAAAACTTGGCCACTCATTGATAAACACACAGGAATTTCTTGACACGGATCTTAAGAACCTTGAAGAAGAGAGTGAGTTCCAACGTTGCACGGAGAGGTTTATGGGGAAAGCTAGAGAAGAGGTGACATGGCTGGTGGAAGAAGAAAAGAGGATAATGGCTCTGGTGAAGAGCACAGCAGATTACTTCCATGGTAAAGCAGGAAAAGATGAAGGGTTGCGTTTGTTTTTGATTGTGCGTGACTTCTTGATAATATTGGATAAAGTGTGTAAAGAGGTTAGGGACACCACCATGAAGTCAACAGTAAAGGTTTCTAGCAAGAAAGAGGCTCCATCAGCACCAACTTCTCCAGATACTCGTCAGCAATCATCGCCACCAGCTTCTGATTTACATAGGATAGTGTTTCCGGCAATTGCAGGGCGAAGAGTGGATGATTCTAGCTCTGATGATGATGATGATGAGAAGCAGGACTTTTCTACATAG	2691	0.4378	MELTRPGYAVIYVILLCALAKGGSEGKSGKEEEFSSYCGALSSSLRLQGKQVMLNGYYSLIWLIQAENVWKHCRKELIERSNDGKNFDLHQLEGRIDTRSILSIENNIKKTTKSLPPHVKKKVLEGLRTGTLHAPDSEEKAGSRYLLTKHSRSTLGLESGHHGRTLIAESPQNAMPPSPATTVPSPGHASESPTPAKSPPSPTPGPTSVNLPLPPDMFVPFPPPPPPRSPRSPPQSLRPIIYAPYPSPHNNDDSTKNTIILGAILCGIIILIGLFLCFREARKNKADKDDRPLLVLTSSDYSGGAQKVVRLGNADKEEYGISNEKNPSNFRNKSIKAGFNNTSMVETKSSQGMGQVPGPPNGGPAPPPPPGPPPPPPPRAPPLAPRPPPPPKAGHPPPAPPKPTAGKNQGPLRSKEGGASEGDAPKPKLKPFFWDKVAAKPDQSMVWHEINAGSFQFNEEMMESLFGCANQNRNERRKDSPSVDTSVQYIKIIEPKKAQNLSILLRALNVTTEEVVDALNEGNEIPIELIQTLLKMAPTQEEELKLRLFSGELTQLGPAERFLKVLVDIPFAFKRLECLMFMFILREEASSIKESFETLEVASNELRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRTERASRSISSVGTEDLDDGNEESEEHYRSLGLQVVSGLSTELGDVKKAALIDGDALSNAVSKLGHSLINTQEFLDTDLKNLEEESEFQRCTERFMGKAREEVTWLVEEEKRIMALVKSTADYFHGKAGKDEGLRLFLIVRDFLIILDKVCKEVRDTTMKSTVKVSSKKEAPSAPTSPDTRQQSSPPASDLHRIVFPAIAGRRVDDSSSDDDDDEKQDFST.	897

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g05121	896	MobiDBLite	consensus disorder prediction	359	405	-	-
	Seca4g05121	896	MobiDBLite	consensus disorder prediction	836	896	-	-
	Seca4g05121	896	MobiDBLite	consensus disorder prediction	839	864	-	-
	Seca4g05121	896	MobiDBLite	consensus disorder prediction	346	428	-	-
	Seca4g05121	896	MobiDBLite	consensus disorder prediction	169	251	-	-
	Seca4g05121	896	PRINTS	Proline rich extensin signature	228	249	-	-
	Seca4g05121	896	PRINTS	Proline rich extensin signature	192	208	-	-
	Seca4g05121	896	PRINTS	Proline rich extensin signature	213	225	-	-
	Seca4g05121	896	PRINTS	Proline rich extensin signature	357	382	-	-
	Seca4g05121	896	PRINTS	Proline rich extensin signature	178	190	-	-
	Seca4g05121	896	MobiDBLite	consensus disorder prediction	193	241	-	-
	Seca4g05121	896	SMART	it6_source	419	837	IPR015425	-
	Seca4g05121	896	Gene3D	Formin, FH2 domain	425	858	IPR042201	-
	Seca4g05121	896	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	432	835	-	-
	Seca4g05121	896	PANTHER	FORMIN-RELATED	246	870	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Seca4g05121	896	Pfam	Formin Homology 2 Domain	423	822	IPR015425	-
	Seca4g05121	896	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	419	848	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g05121	Seca-Chr4	95648792	95654722	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g05121	415	837	FH2 protein (formin) Gene Family	AT5G67470	48.028	1.01e-118	381

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g05121	-		-	gmx:100816477	753.436