Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05109 ATGGTAAACACCAAGGGAGAGACCAGAAGGATAATTATCCTTAACTGGTCTTCTAGTCACATGCTGTCTATCTTTCTTTTGTGCTTATTCTTTTTCACTTTTAGGCATTGCTCAGCTAGAGATACCATAACCATTAACAACTCCTTACAAGATGGGGGAGAGGATACTCTCATTTCAGCAGGAGAAAGTTTTGAATTTGGATTTTTCACTCCTAATGGAAGCACTAGTGCCAAAAGATACGTGGGAATATGGTACTACAACTTAACTCCACAAACAGTTGTGTGGGTTGCTAACAGAGACAACCCACTTCCAGATTCTGGGGGTTCTTTTGCCATTGCAGAGGATGGGAATCTCAGGGTTATGGACAGAAATGGGAAATCCTACTGGGGAACAAATCTTGAAAAATCATCTTCACAACACAGGACAGTGAAATTATTGGACACTGGAAACCTTATTATAAGCAATGATGACAAAGGAAATCATCCAGTGAAGATTCTGTGGCAGAGTTTTGCTAATCCAACAGATACTTTTCTTCCAGGCATGAAAATGAGTGACAGTTTAGCATTAACTTCATGGAGAAGTTATGAAGACCCAGCAAGAGGGAACTACTCTTTTGAGCAAGATCAAGGAGAGAATCAGTATATTATATGGAAGAGATCCATCAGGTATTGGAAAAGCAGTGTATCAGGTAAGTTTATTGGAACTGGTGAAATGTCATCAGCAATATCTTACCTGTTGTCTAATTTCACCATGAGAATATCCCCAAACAACACTGTTCCCTTTCTCACTTCATCACTATATAGTGACACTAGGCTGGTCATGACTTACTGGGGTCAGCTTCAGTACCTAAAGATGGACTCAGAGAAGAAATGGTTGTTAGTTTGGGTAGAGCCAAGAGATAGATGTAGTGTGTTCAATGCCTGTGGAAACTTTGGCAGTTGTAATAGCAAGTATGATTCTATGTGCAAGTGTTTGCCTGGGTTTAAGCCTAATTCTATTGAAAGTTGGAATGCTGGAGACTATTCAGGTGGATGCAGCAGGGAAACAAATGTGTGTAGTGAGGATGCTAAGAGTGACACATTTTTGAGCTTAAAAATGATGAAAGTAGGGAACCCAGATGCTCAATTTAATGCTAAGAGTGAACAGGAATGCATGTCAGAGTGCCTCAACAATTGCCAGTGCTATGCATATTCATATGAAGACACTGCAAGGCAGGGTGATGGTGGTGATGCTGATGCAATTTGTTGGATTTGGTATGAGGACTTGAACAATCTTGAAGAAGAGTATGAGGGTGGTTGTGACCTTCATGTTCGCGTGGCATTTTCTGATATAGAATCCACTGGGAACAGTTGTGGGACTTGTGGCACCAACTTCATTCCGTATCCCCTTAGCACAGGACCAAATTGTGGTGACCCCATGTACTTCAATTTTCACTGCAACACTTCAACTGGCGAGCTTGACTTTGAGACCCCTGGGGGTACCTATCAAGTGATAAGCATAAACCCAGAAACACAAAAATTCTTGATCCACAGGAAAAATGTACTTAACTGTGAGGGTCAAAGTTCAAGGGACAAGCTTCTGCTTCTCAACCATTCATCTCCATTTCATCTTACTGGAAATTGCTATGCTGATCCAAGCACCTTTAGTTCTAATGCTCCCATGAAACATGGAGTAGAAATAGAATTAAGTTGGGAGCCACCATTAGAGCCAATTTGCTCTTCAATGTTGGACTGCAAGGATTGGCCAAATTCAACTTGCAATACTACAACTGATGGAAAGAAGAGATGCCTTTGCAACAAAAACTTTCTTTGGGATGGCTTGAAATTAAATTGTACTCTAGAAGGGGATAACTACCAAACAGAAAGGCCTGTGTCCTCACAAAAGATCATTGCACTCACTTTTACAACTGTGATTTTCTTAATTATTCTCTCAAGTACTATTACATGTATTTACTTGCGGAAAAGGAGACAAGCCAAGACACAAGAGAGCAGGGTATATGTTCAGAAGAACTCAGGAATTAACTTATATGACAGTGAGAGATATGTTAGAGACTTGATTGAATCAGGTAGGTTCAAAGAAGATGATGCACAGGCTATTGATATTCCACATTTTCATTTGGAAAGCATACTTGATGCTACTAATAACTTTGCAAATGCAAACAAGCTTGGACAAGGAGGGTTTGGTCCTGTTTACAAGGGAAAATTTCCTGGAGGACAAGAAATAGCAGTGAAGAGACTTTCAAGTTGTTCTGGACAAGGTTTAGAGGAGTTTAAGAATGAAGTTGTGTTGATTGCCAAGCTTCAACATCGAAACCTAGTTAGACTTCTGGGTTATTGTTTGGAAGGAGATGAAAAGATGCTAGTATATGAATATATGCCAAATAGAAGCTTGGATGCTTTCATTTTTGGTAAGAGTTAA 2418 0.3995 MVNTKGETRRIIILNWSSSHMLSIFLLCLFFFTFRHCSARDTITINNSLQDGGEDTLISAGESFEFGFFTPNGSTSAKRYVGIWYYNLTPQTVVWVANRDNPLPDSGGSFAIAEDGNLRVMDRNGKSYWGTNLEKSSSQHRTVKLLDTGNLIISNDDKGNHPVKILWQSFANPTDTFLPGMKMSDSLALTSWRSYEDPARGNYSFEQDQGENQYIIWKRSIRYWKSSVSGKFIGTGEMSSAISYLLSNFTMRISPNNTVPFLTSSLYSDTRLVMTYWGQLQYLKMDSEKKWLLVWVEPRDRCSVFNACGNFGSCNSKYDSMCKCLPGFKPNSIESWNAGDYSGGCSRETNVCSEDAKSDTFLSLKMMKVGNPDAQFNAKSEQECMSECLNNCQCYAYSYEDTARQGDGGDADAICWIWYEDLNNLEEEYEGGCDLHVRVAFSDIESTGNSCGTCGTNFIPYPLSTGPNCGDPMYFNFHCNTSTGELDFETPGGTYQVISINPETQKFLIHRKNVLNCEGQSSRDKLLLLNHSSPFHLTGNCYADPSTFSSNAPMKHGVEIELSWEPPLEPICSSMLDCKDWPNSTCNTTTDGKKRCLCNKNFLWDGLKLNCTLEGDNYQTERPVSSQKIIALTFTTVIFLIILSSTITCIYLRKRRQAKTQESRVYVQKNSGINLYDSERYVRDLIESGRFKEDDAQAIDIPHFHLESILDATNNFANANKLGQGGFGPVYKGKFPGGQEIAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCLEGDEKMLVYEYMPNRSLDAFIFGKS. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05109 805 SMART blect_4 48 173 IPR001480 -
Seca4g05109 805 CDD B_lectin 46 173 IPR001480 -
Seca4g05109 805 Pfam D-mannose binding lectin 92 185 IPR001480 -
Seca4g05109 805 SUPERFAMILY Protein kinase-like (PK-like) 698 805 IPR011009 -
Seca4g05109 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 681 791 - -
Seca4g05109 805 ProSiteProfiles Protein kinase domain profile. 716 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05109 805 ProSiteProfiles PAN/Apple domain profile. 352 433 IPR003609 -
Seca4g05109 805 ProSiteProfiles Bulb-type lectin domain profile. 42 166 IPR001480 -
Seca4g05109 805 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 35 170 - -
Seca4g05109 805 PIRSF SRK 14 460 IPR024171 GO:0004674
Seca4g05109 805 PIRSF SRK 572 805 IPR024171 GO:0004674
Seca4g05109 805 Pfam Protein tyrosine and serine/threonine kinase 719 801 IPR001245 GO:0004672|GO:0006468
Seca4g05109 805 ProSiteProfiles EGF-like domain profile. 298 334 IPR000742 -
Seca4g05109 805 Gene3D Phosphorylase Kinase; domain 1 682 791 - -
Seca4g05109 805 CDD PAN_AP_plant 352 440 - -
Seca4g05109 805 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 25 801 - -
Seca4g05109 805 Pfam S-locus glycoprotein domain 229 331 IPR000858 GO:0048544
Seca4g05109 805 Gene3D - 35 171 IPR036426 -
Seca4g05109 805 SMART ntp_6 356 439 IPR003609 -
Seca4g05109 805 Pfam PAN-like domain 355 424 IPR003609 -
Seca4g05109 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 93 197 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05109 Seca-Chr4 95483212 95488723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05109 694 802 Receptor kinase-like Gene Family AT4G23320 65.138 1.63e-38 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05109 S_locus_glycop 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05109 - - gmx:100775297 1420.22