Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05106 ATGTATTCCTTCGCTCCTACTCGTCTTGTTATTGTTTTCTCTACATCCTTTACAAACAACAATGAATCACAACTAAAAATGAACAGGCATCACGTTCTCTTATCTCGTAACATGAGAATAATTGTTCTCTTCCACATGTATGCTTGGTTGCTGTGCTTTACTCACCCGTGTTTAGCAGGAGATACTCTGAACGCCAGCCTGAATATAACAGGTAATGGATTCCTTGTTTCAGCTGGGAAAAAATTTGAACTAGGCTTCTTTTCTCCTCTTAACGTTACTGGCGGTAAAGGAAGGTACTTAGGGATGTGGTATCACAGGCAAGAGGACTCAGAAGATCTAACAGTGGTTTGGGTTGCCAACAGAGACAACCCTGTAGCTGTTGATTCCACTGGAGTTTTCCAAATAGCAGAGGATGGGAATCTGGTAGTGGTAGACACATCTGGTAAAAGCTATTGGTCATCCAGACTCAAAGGCTCTTCATCCACAAACAGGACAGTGAAGCTCATGGATTCTGGGAATCTTGTGTTACTAGATGGAATCAAAGTGTGGGAGAGCTTTGAACACCCAATTGACACATTCCTACCTGGCATGAACATGGATAGGAATTTGAAGTTAACCAGTTGGAGAAACCTCACAGACCCAGGAAGTGGGAACTTCACTTTTAAGATGGAAGACAACCGTTTCATCATCTTAAACCATGACCAACTTTATTGGGAGAGTGAAGAACAAGGGATACTGAATTCAAAAACAGAGTCTGATGATGACATGAGCACTGAAGTTTACATCTTGTTGACCAACTTCACCGTACTGGACCTAAATTCCACCAAATACGAGAACACGAGGCTGCTCCTCAATTATACAGGGATGATCCAATTTCTGCTGAGGGGTAATTTCCAAAGCTTTGTTGGGTGGTTTCAGCCAAAAACCTATTGCTTAACTTATAATGCTTGCGGGAACTTCACCAGCTGCAATGACAATGTCAATGATAACTATAACGTATGCAAATGTTTGCCTGGATTCAATGATGAAAATAATGACATGGGAAAGGGACGTTCTTCTCCTCTACTATGTACCAGAAAATCAGCAGCAGCATGTGGAAAGGACACCACCAAGTTCTTAAACTTGGTCATGATGAAAATAAGAAGGCCGGATAAAAAAGTGACTGCAGTAAACGAAACAGATTGCCAATCTAAGTGCCTTGAGATGTGCCAGTGCCAGGCTTATTCATACGCTACACCTACGGCTACAGTACTGCTGCGTGTTAACCCCACCACATGTTGGATCTGGACACAGGATTTAACGACTCTTAAAGAAGACTACCTTGGAGGTGGTTATAGGAAACTGTTTGTCAGGGTAGACGAATCAGACATAGCACCAACTCCTAGAACTTGTAAGCCTTGCGGCACAAACACAGTCCCTTATCCGCTGAGCACAGGACTCAGTTGTGGAGACCCTGCGTACTTCAAGTTCAGCTGTAACATCTCAACAGGTCAGCTTAGCTTCCACGACACCAACAACAACAGTTACCGAGTAACTCTCGTAGATGCAGTTTCAAGAAAGTTCGAAATCCGGCACAATCAGGGTGACGACAATACTTATAAACGTTACTACTGCGGTGGAGAAAACGATAAAAGTCTGGAGGTTTCTTCACCATTTTATATGACCAACGACAATCGGTGCTCTGTCTCTGACCTAGAACAAGTTTATTGGCAACTACCATCTGAACCAACTTGTGCTGAGCCCACTGATTGCAACAGTTGGAAACATTCAACTTGCAAAGGAGTTAAATGTCTTTGCGATCCAAACTATTATTGGCACGGCGACCTTTTAAGTTGTACTGAAAAAGTTATATCCACTCCTAATCCTACCTCAGAGGAGCCCACAAGAAAAGGAAATTCAAACTCTAAAAGCTCACTGTCTTTGATTCTTGGCATAACTCTTCCAGGCGTGGTTGTTCTGTCATGCCTAATTATTTTTGCTTATGTATGCAGACGAAAAATAGCTCTAAAGTTTAAGCAAGAGGGGGAAAGCATACAGAGAAATAGAGGGCGCTATTATGATAGTGAAAGACAAGTGAAAGATTTGATAGACTTGGAGGGGTTAGAAGAAAAAGACAATGAAGGCATAGAGGTCCCCTATTTTGATTTTGAGAGCATACTAGTAGCTACTGATTATTTCTCAGATGCAAACAAGCTTGGAAAAGGGGGTTATGGACCAGTTTACAAGGGTAAGCTTGAAGGAGGTCAAGATATTGCGGTGAAGAGGCTTTCAAGTGTTTCATCACAAGGCTTACAGGAATTCAAGAATGAGGTTGTTTTAATTGCCAAACTTCAACATAGGAATCTTGTTAGACTCCGGGGCTATTGCGTAAAAGGAGATGAAAAAATTCTACTTTATGAATATATGCCTAACAAGAGCTTAGACTCATTTATATTTGATCCCACAAAAAGTGTACTTTTGGACTGGCAAATGCGATTTAACATAATTCTCGGAGTTGCTCGTGGGCTACTTTATCTTCACCAAGACTCAAGACTCAGAGTAATTCATAGAGATTTAAAAACCAGCAACATTCTTCTAGATGGGGAGATGCAACCAAAAATTTCAGATTTTGGATTGGCAAGAATATTTGGAGGCAAAGAGACTGAGGCAAGCACCGAGAGGGTTGTAGGGACATATGGATACATGTCTCCTGAGTATGCATTGGATGGACATTTCTCAACCAAATCGGATGTTTTCAGTTTTGGTGTCATGTTGCTTGAGATTATCAGTGGGAAAAAGAACACGGGATTCTATCAGTCTAAAGCAATTTCAAGCCTTTTGGGTTATTTGCTATGCTTTTCTCCGCCGTGTTTAGCAGGAGATACTCTGAACGCCGGCCAAAAAATAACAGGCAATGAAACTATCCTTGTTTCAGCTGGACAAAAATTTCAACTTGGCTTCTTTTCTCCTACTAACGGTAAAGTAAGATACTTAGGGATATGGTATTACAGGCAAGAGGACTCAGAACCTCTAACAGTGGTTTGGGTTGCAAACAGAGACCACCCTGTAGCTGTTGATTCCACTGGAGTTTTCCAAATAGCAGAGGATGGGAATCTGGTAGTAGTAGACACATCTGGAAATAGTTATTGGTCATCCAAAATCAAAGGCTCTTCATCCACAAACAGGAGAGTGAAGCTCATGGATTCTGGGAACCTTGTGTTACTAGATGGAATCAAAGTGTGGGAGAGCTTTGAACACCCAACTGACACATTCCTACCTGGCATGAACATGGACAGGAATTTAGAGTTGACTAGTTGGAGAAGCCTCACAGACCCAGGAAGTGGAAACTTCACATTTAAGATGGAACAAACAGGGGACAACCGTTTCATCATCTTAAACCATGACCAACTTTACTGGGAGAGTGAAGAACAAGGGATGCTGAATTCAGAAACAGAGTCTGATGATGACATGAGCACTGAAGTTTACATCTTGTTGACCAACTTCACCATTGCTCAATCAACGAACCTAGCTCTCGAGAACTACGAGAACACGAGGCTGCTACTCAATTTTACAGGGATGATACAATTTATGGTGAGAGATAATTTCCAAGGAGATTCTGTTCGGTGGTTTCAGCCAAAAACAAAGTGCTTGATATATAATGATTGCGGGAACTTTACCAGCTGCAATGACAATGATAAGGTATGCAAATGTTTGCCTGGATTCAGTGATGAAAATAATTACACGGGAATGGGAGATTCTTCTCTACTATGTACCAGAAAATCAGCATCATGCGGAAAAGACACCAACAGCACCAGGTTCTTAAACTTGGTTAATATGAAAATAAGAAGGCCCGATAAAAAAGTCTCTGCAGAAAACGAAGCAGATTGCCAATCTAAGTGTCTTGAGATGTGTCCCCAGTGCCAGGCTTATTCATACGCTAAACCTACCCTGCAGCGTGGTACTTTCCCCACCACATGTTGGATCTGGACACAGGATTTAACTACTCTTAAAGAAGAGTATATTGGTGGTGATGGTAGGAAACTGTTTCTCCGGGTAGAGCAATCAGACATAGCACCAACTCCTAGAACTTGTGAGCCTTGTGGCACAAACACAGTCCCTTATCCGCTGAGCACTGGACCCAGTTGTGGAGACCCTGCGTATTTCAAGTTCAGCTGCAGCAGCTCAACAGGTGAGCTTAGCTTCTCCACCACCAACAACGAAAGTTACCGAGTTACTCTTGTAAATGCAGTTTCAAGAAACTTCATAATCCGGGTCACTCAAGATGAGGGTAATTCTTATAATCGTTACTGCGGTGAAAACAAGGATAAAAATCTGGAGGTTTCTTCACCGTTTGATATGACCAACGACAACGCGTGCTCTGACCTAGTACAAGTTAATTGGGAACTACCCTCAGAACCAACTTGTGCTCAATCCTCTGATTGCCAAGGTTGGAAACATTCAACATGCAAAGGAAATAGGTGTCTTTGTGATGTAAACTATCATTGGCATGGCGATCTTTTAAGTTGTACCGAAAATCCTACCTTAGAGGAGCCCACAAGTAAAGGAAACTCAAATTCTAAAACCTCACTGTCTTTGATTCTTGGCATAACTCTTCCAGGCGTGATTGTTCTGTCATGCCTAATTATTTTTGCTTATGTATGCAGACGAAAAATAGCTGCGAGTTCAGAGGGGGAAAGCATACAGAGAAATAGAGGGCGCTATTATGATAGTGAAAGGCATGTGAAAGATTTAATAGACTTGGAAGGATTAGAAGAAAAAGATAATGAAGGCATAGAGGTACCCTATTTTGATTTTGAGAGCATATTAGTAGCTACAGATTACTTCTCAGATGCAAATAAGCTTGGAAAAGTGGGTTATGGACCAGTCTACAAGGGTAGGCTTGAAGGAGGTCAAGATATTGCAGTGAAGAGGCTTTCAAGTGTTTCATCACAGGGCTTACAAGAATTCAAGAATGAGGTTGTTTTAATAGCAAAACTTCAACATCGGAACCTTGTTAGACTGCGGGGCTATTGCATAAAAGGAGATGAAAAAATTCTACTTTATGAATATATGCCTAATAAGAGCTTGGACTCATTTATATTTGATCCCACAAAAAGTGTACTTTTGGATTGGCAAATGCGATTTGACATAATTCTCGGAATTGCTCGTGGGCTACTTTATCTTCACCAAGACTCAAGACTCAAGACTCAGAGTAATTCACAGAGATTTAAAAACCAGCAACATTCTTCTAGATGGGGAGATGCAACCAAAAATTTCAGATTTTGGATTGGCAAGAATATTTGGAGGCAAAGAGACTGA 5298 0.4143 MYSFAPTRLVIVFSTSFTNNNESQLKMNRHHVLLSRNMRIIVLFHMYAWLLCFTHPCLAGDTLNASLNITGNGFLVSAGKKFELGFFSPLNVTGGKGRYLGMWYHRQEDSEDLTVVWVANRDNPVAVDSTGVFQIAEDGNLVVVDTSGKSYWSSRLKGSSSTNRTVKLMDSGNLVLLDGIKVWESFEHPIDTFLPGMNMDRNLKLTSWRNLTDPGSGNFTFKMEDNRFIILNHDQLYWESEEQGILNSKTESDDDMSTEVYILLTNFTVLDLNSTKYENTRLLLNYTGMIQFLLRGNFQSFVGWFQPKTYCLTYNACGNFTSCNDNVNDNYNVCKCLPGFNDENNDMGKGRSSPLLCTRKSAAACGKDTTKFLNLVMMKIRRPDKKVTAVNETDCQSKCLEMCQCQAYSYATPTATVLLRVNPTTCWIWTQDLTTLKEDYLGGGYRKLFVRVDESDIAPTPRTCKPCGTNTVPYPLSTGLSCGDPAYFKFSCNISTGQLSFHDTNNNSYRVTLVDAVSRKFEIRHNQGDDNTYKRYYCGGENDKSLEVSSPFYMTNDNRCSVSDLEQVYWQLPSEPTCAEPTDCNSWKHSTCKGVKCLCDPNYYWHGDLLSCTEKVISTPNPTSEEPTRKGNSNSKSSLSLILGITLPGVVVLSCLIIFAYVCRRKIALKFKQEGESIQRNRGRYYDSERQVKDLIDLEGLEEKDNEGIEVPYFDFESILVATDYFSDANKLGKGGYGPVYKGKLEGGQDIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVRLRGYCVKGDEKILLYEYMPNKSLDSFIFDPTKSVLLDWQMRFNIILGVARGLLYLHQDSRLRVIHRDLKTSNILLDGEMQPKISDFGLARIFGGKETEASTERVVGTYGYMSPEYALDGHFSTKSDVFSFGVMLLEIISGKKNTGFYQSKAISSLLGYLLCFSPPCLAGDTLNAGQKITGNETILVSAGQKFQLGFFSPTNGKVRYLGIWYYRQEDSEPLTVVWVANRDHPVAVDSTGVFQIAEDGNLVVVDTSGNSYWSSKIKGSSSTNRRVKLMDSGNLVLLDGIKVWESFEHPTDTFLPGMNMDRNLELTSWRSLTDPGSGNFTFKMEQTGDNRFIILNHDQLYWESEEQGMLNSETESDDDMSTEVYILLTNFTIAQSTNLALENYENTRLLLNFTGMIQFMVRDNFQGDSVRWFQPKTKCLIYNDCGNFTSCNDNDKVCKCLPGFSDENNYTGMGDSSLLCTRKSASCGKDTNSTRFLNLVNMKIRRPDKKVSAENEADCQSKCLEMCPQCQAYSYAKPTLQRGTFPTTCWIWTQDLTTLKEEYIGGDGRKLFLRVEQSDIAPTPRTCEPCGTNTVPYPLSTGPSCGDPAYFKFSCSSSTGELSFSTTNNESYRVTLVNAVSRNFIIRVTQDEGNSYNRYCGENKDKNLEVSSPFDMTNDNACSDLVQVNWELPSEPTCAQSSDCQGWKHSTCKGNRCLCDVNYHWHGDLLSCTENPTLEEPTSKGNSNSKTSLSLILGITLPGVIVLSCLIIFAYVCRRKIAASSEGESIQRNRGRYYDSERHVKDLIDLEGLEEKDNEGIEVPYFDFESILVATDYFSDANKLGKVGYGPVYKGRLEGGQDIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDPTKSVLLDWQMRFDIILGIARGLLYLHQDSRLKTQSNSQRFKNQQHSSRWGDATKNFRFWIGKNIWRQRD. 1766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05106 1765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Seca4g05106 1765 CDD B_lectin 69 189 IPR001480 -
Seca4g05106 1765 Gene3D Transferase(Phosphotransferase) domain 1 1594 1745 - -
Seca4g05106 1765 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 51 945 - -
Seca4g05106 1765 SUPERFAMILY Protein kinase-like (PK-like) 709 933 IPR011009 -
Seca4g05106 1765 Pfam PAN-like domain 365 434 IPR003609 -
Seca4g05106 1765 Pfam PAN-like domain 1262 1327 IPR003609 -
Seca4g05106 1765 Gene3D Phosphorylase Kinase; domain 1 694 801 - -
Seca4g05106 1765 SUPERFAMILY alpha-D-mannose-specific plant lectins 115 214 IPR036426 -
Seca4g05106 1765 ProSiteProfiles Protein kinase domain profile. 726 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05106 1765 ProSiteProfiles PAN/Apple domain profile. 365 453 IPR003609 -
Seca4g05106 1765 CDD PAN_AP_plant 1256 1345 - -
Seca4g05106 1765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 802 947 - -
Seca4g05106 1765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 691 801 - -
Seca4g05106 1765 SUPERFAMILY Protein kinase-like (PK-like) 1591 1724 IPR011009 -
Seca4g05106 1765 CDD STKc_IRAK 732 926 - -
Seca4g05106 1765 SMART serkin_6 726 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05106 1765 Pfam Protein tyrosine and serine/threonine kinase 1612 1724 IPR001245 GO:0004672|GO:0006468
Seca4g05106 1765 ProSiteProfiles Bulb-type lectin domain profile. 953 1080 IPR001480 -
Seca4g05106 1765 ProSiteProfiles Bulb-type lectin domain profile. 60 189 IPR001480 -
Seca4g05106 1765 Pfam D-mannose binding lectin 114 207 IPR001480 -
Seca4g05106 1765 Pfam D-mannose binding lectin 1005 1097 IPR001480 -
Seca4g05106 1765 SUPERFAMILY alpha-D-mannose-specific plant lectins 1006 1105 IPR036426 -
Seca4g05106 1765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 1573 1683 - -
Seca4g05106 1765 ProSiteProfiles PAN/Apple domain profile. 1257 1346 IPR003609 -
Seca4g05106 1765 Gene3D Transferase(Phosphotransferase) domain 1 802 948 - -
Seca4g05106 1765 ProSiteProfiles EGF-like domain profile. 307 346 IPR000742 -
Seca4g05106 1765 ProSiteProfiles Protein kinase domain profile. 1608 1765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05106 1765 CDD PAN_AP_plant 365 452 - -
Seca4g05106 1765 Gene3D - 950 1078 IPR036426 -
Seca4g05106 1765 Gene3D - 56 186 IPR036426 -
Seca4g05106 1765 SMART ntp_6 367 452 IPR003609 -
Seca4g05106 1765 SMART ntp_6 1261 1345 IPR003609 -
Seca4g05106 1765 FunFam Receptor-like serine/threonine-protein kinase SD1-8 949 1077 - -
Seca4g05106 1765 Pfam Protein kinase domain 727 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05106 1765 Pfam S-locus glycoprotein domain 275 343 IPR000858 GO:0048544
Seca4g05106 1765 Pfam S-locus glycoprotein domain 1167 1236 IPR000858 GO:0048544
Seca4g05106 1765 CDD B_lectin 962 1080 IPR001480 -
Seca4g05106 1765 FunFam Receptor-like serine/threonine-protein kinase SD1-8 55 186 - -
Seca4g05106 1765 SMART blect_4 960 1080 IPR001480 -
Seca4g05106 1765 SMART blect_4 66 189 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05106 Seca-Chr4 95433061 95447109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05106 714 931 Receptor kinase-like Gene Family AT4G11530 66.514 1.16e-95 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05106 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05106 - - tpra:123882048 1090.1