Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05102 ATGAAGAAGTGTGAGCTGTGCAAGGTTCCGGCAAGGACGTTTTGTGAGTCAGACCAGGCTAGCTTGTGCTGGGACTGCGATGCCAAGGTTCACGGTGCCAACTTCTTGGTTGCAAGGCACTCCAGGACCCTCCTCTGCGACGTTTGCCGTTCCCCAACGCCGTGGAAAGCCTCCGGCGCCAGGCTCGGCAACACCGTCTCCGTCTGCGACCATTGCGCCGCCGAAGAAGAAGTGGAAGAGAGCGAAGGAGGCAATGACGATGAGATGGAGACGGAGGACGACGACGATTTTGATAGCGACGTCGTTGACGGAGACGGTGATAATCAGGTCGTGCCTTGGTCCTCCTTGACGCCGCCTCCGCCGGCGGCGAGTTCCTCCGGCAGCGAATGGTCGTCGGTTAGCAGGTGCAACGGCGATGGAGATGCCTCTGCTTCTGTTTCTGAACCGGTAACGACAATGGCTTCGCTGAAACGACAGCGTGAGGATGATGCTTCAGATCGTGATCTCCAGGAGGATCTGAACGGTTCAACATCTCAACGGAGGTGCGGTGGGAAGTTGAGTGAGGAGGTGGCGTGTGGCGGAGAACCACCGTCGAAGGGTGACTGA 606 0.5842 MKKCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHSRTLLCDVCRSPTPWKASGARLGNTVSVCDHCAAEEEVEESEGGNDDEMETEDDDDFDSDVVDGDGDNQVVPWSSLTPPPPAASSSGSEWSSVSRCNGDGDASASVSEPVTTMASLKRQREDDASDRDLQEDLNGSTSQRRCGGKLSEEVACGGEPPSKGD. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05102 201 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 182 - -
Seca4g05102 201 CDD Bbox1_BBX-like 3 45 - -
Seca4g05102 201 MobiDBLite consensus disorder prediction 75 201 - -
Seca4g05102 201 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Seca4g05102 201 MobiDBLite consensus disorder prediction 155 174 - -
Seca4g05102 201 SMART bboxneu5 1 45 IPR000315 GO:0008270
Seca4g05102 201 MobiDBLite consensus disorder prediction 120 154 - -
Seca4g05102 201 MobiDBLite consensus disorder prediction 75 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05102 Seca-Chr4 95392608 95393743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05102 2 94 C2C2-CO-like Transcription Factor Family AT5G54470 60.638 2.75e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05102 - - gmx:100782655 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05102 4 95392608 95393743 Seca4g05102 4 95392608 95393743 ECH
Seca4g05102 4 95392608 95393743 Seca4g05102 4 95392608 95393743 PCT