Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05095 ATGGACAACATGAAGAAGAAACCATGCTTCTGGCTTTCTCTCTTCATCATCTCCTTCTCCTTTCACATCCACCCCTCACTTTCTGCTTTGACCACCATCTCAGCAAATCAATCTCTTTCCGGTGATCAAACTCTTGTCTCCAAAGATGGGAACTTCGAATTGGGTTTCTTCAATAAAGGTAATTCCTCTAACTACTACATAGGCATGTGGTACAAAAAGATATCTGAAAGGACATATGTTTGGGTAGCAAATAGAGATGCCGCAGTTTCAGATAAGAATTCTGCCACGCTTACAATATCTGGTGGTAATTTAGTTCTCTTTGATCAGTCTCAAAATCTAGTTTGGTCAACAAATTTGAGTTCTCCTAGCTCAGGTTCTGTTGTAGCTGTCCTTCTAGATACTGGAAATCTTATATTAAGCAATAGGCCTAATGCATCAGTATCAGAAGCTCTGTGGCAGAGTTTTGATCATCCAACAGATACATGGCTTCCTGGTGGCAAAATCAGACTCGACAAGAAAACAAAGAAGCCTCAATATCTCACTGCATGGAAGAACAGCGAAGATCCAGCACCAGGCCTATTCTCTCTGGAACTAGACCCCAATGGAACCAATGCATATCTGATTCTTTGGAACAAAACTGAACAGTATTGGTCAAGTGGTCCTTGGAATGGACACATCTTCAGCTGGGTTCCTGAAATGAGGTTAAACTATATCTACAACTTCACCTTTGAATCGAATGAGAACGAGAGCTACTTCACCTACACAGTGTATAACACTTCTGTTTTATCTCGTTTTGTGATGGATATCTCGGGGCAGGTCAAGCAACTCACTTGGCTGGAAAATGCTCAGCAATGGAATTTGTTCTGGTCACAGCCAAGAAGACAGTGTGAGGTTTATGCTTTCTGTGGTGCTTTTGGGAGCTGCACTGAGACCTCCATGCCATACTGTAATTGTTTAACTGGCTATGAGCCAAGGTCACAGTCTGATTGGAAACTGGGAGATTACTCAGGTGGGTGTGTGAAAAGAAACAACTTTCAGTGTGAGACATCCAATCCCTCTAATGGGGCCAAGGACAGGTTCCTAACATTGTCCATCACAACTTTGCCTGAACACTCACAATTTGTGGGAGCAGGTAATGTTGGGGAATGCGAGTCAACCTGTTTGAGCAACTGTTCCTGCACTGCATATGCTTATAACAGTAGCGGGTGTTCAATTTGGAAGGAAGATCTCTTGAATCTGCAACAGCAAACTCAAGATGATGGTAGTGGTCAGACTTTGTTTCTCAGACTTGCAGCATCTGAGTTTCATGATTCTAAAAGCAATAATGGGACAACCATTGGCATTGTTGCGGGTGTGGTTGGTGGCATAGTTGTTCTTCTAGCCCTTCTTCTTTTTGTCTTGCTAAGACGAAGAAAGAGACGGGCTAGAACAAGAACATCAGTGGAGGGATCATTGATTGCATTTGGGTACAGAGATTTGCAACATGCCACAAAGAATTTCTCAGAGAAGCTAGGTGGAGGAGGTTTTGGTTCTGTCTTCAAAGGAACAATGTCTGATTCAAGTGTTATAGCAGTGAAGAAGCTTGAAAGCATTAGTCAAGGTGAGAAGCAGTTCAGAACAGAAGTGAGTACAATTGGGACAGTTCAACATGTCAACCTTGTTAGGCTTCGTGGGTTCTGTTCTGAAGGTGATAAGAAGCTGCTGGTTTATGATTACATGCCAAATGGCTCCTTGGATTCCAAACTGTTTCAGGAAGATAACTCCAAGTTGTTGGATTGGAAAGTAAGATACCAAATTGCTCTGGGAACAGCCAGGGGATTGAATTATCTCCATGAGAAGTGTAGGGACTGTATCATACACTGTGATGTGAAGCCAGAAAACATTCTCCTAGATGCTGAATTTTGTCCAAAGGTAGCAGACTTTGGCCTTGCAAAGCTGGTTGGAAGGGACTTCAGCAGGGTCCTCACTACTATGAGAGGAACAAGAGGTTATCTTGCCCCAGAGTGGATTTCAGGAGTGGCTATCACTGCCAAAGCTGATGTTTACAGCTATGGAATGATGCTTTTTGAGTTTGTATCAGGTAGGAGGAACTCTGAGCCTTCTGAAGATGGTCAAGTTAAATTCTTTCCTACCTTGGCTGCAAACATAGTACACCAAGGAGGCAATGTGCTTAGCTTGTTGGACCCTAGGTTAGAGGGAAATGCTGACATTGAAGAGGTTACCCGAGTTATAAAAGTTGCTTCCTGGTGTGTCCAAGATGATGAAGCTCACAGGCCATCCATGGGTCAGGTTGTTCAAATCCTTGAGGGGCTCTTGGATGTGACTTTGCCTCCAATTCCAAGATCCCTTCAAGCCTTTGTTGACAACCATGAGAACATAGTTTTCTTCACTGACTCAAGCTCCACACATAGTTCACAGGTAAAGAGCAATGTCTCAACAGCCTCCTCTCAAGTCAAAAGTAATATCTCATCAGCTAGCTCATAG 2484 0.4316 MDNMKKKPCFWLSLFIISFSFHIHPSLSALTTISANQSLSGDQTLVSKDGNFELGFFNKGNSSNYYIGMWYKKISERTYVWVANRDAAVSDKNSATLTISGGNLVLFDQSQNLVWSTNLSSPSSGSVVAVLLDTGNLILSNRPNASVSEALWQSFDHPTDTWLPGGKIRLDKKTKKPQYLTAWKNSEDPAPGLFSLELDPNGTNAYLILWNKTEQYWSSGPWNGHIFSWVPEMRLNYIYNFTFESNENESYFTYTVYNTSVLSRFVMDISGQVKQLTWLENAQQWNLFWSQPRRQCEVYAFCGAFGSCTETSMPYCNCLTGYEPRSQSDWKLGDYSGGCVKRNNFQCETSNPSNGAKDRFLTLSITTLPEHSQFVGAGNVGECESTCLSNCSCTAYAYNSSGCSIWKEDLLNLQQQTQDDGSGQTLFLRLAASEFHDSKSNNGTTIGIVAGVVGGIVVLLALLLFVLLRRRKRRARTRTSVEGSLIAFGYRDLQHATKNFSEKLGGGGFGSVFKGTMSDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGDKKLLVYDYMPNGSLDSKLFQEDNSKLLDWKVRYQIALGTARGLNYLHEKCRDCIIHCDVKPENILLDAEFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEPSEDGQVKFFPTLAANIVHQGGNVLSLLDPRLEGNADIEEVTRVIKVASWCVQDDEAHRPSMGQVVQILEGLLDVTLPPIPRSLQAFVDNHENIVFFTDSSSTHSSQVKSNVSTASSQVKSNISSASS. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05095 827 Gene3D - 27 156 IPR036426 -
Seca4g05095 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 223 IPR036426 -
Seca4g05095 827 Pfam S-locus glycoprotein domain 217 325 IPR000858 GO:0048544
Seca4g05095 827 Pfam D-mannose binding lectin 78 184 IPR001480 -
Seca4g05095 827 Gene3D Phosphorylase Kinase; domain 1 465 572 - -
Seca4g05095 827 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Seca4g05095 827 FunFam Serine/threonine-protein kinase 465 572 - -
Seca4g05095 827 SMART blect_4 36 158 IPR001480 -
Seca4g05095 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Seca4g05095 827 FunFam Serine/threonine-protein kinase 573 776 - -
Seca4g05095 827 CDD PAN_AP_plant 353 431 - -
Seca4g05095 827 FunFam Serine/threonine-protein kinase 25 155 - -
Seca4g05095 827 Gene3D Transferase(Phosphotransferase) domain 1 573 776 - -
Seca4g05095 827 ProSitePatterns Protein kinases ATP-binding region signature. 504 527 IPR017441 GO:0005524
Seca4g05095 827 Pfam Protein kinase domain 501 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05095 827 ProSiteProfiles Protein kinase domain profile. 498 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05095 827 SMART serkin_6 498 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05095 827 PIRSF SRK 3 820 IPR024171 GO:0004674
Seca4g05095 827 PANTHER OS07G0415500 PROTEIN 13 780 - -
Seca4g05095 827 Pfam PAN-like domain 355 412 IPR003609 -
Seca4g05095 827 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Seca4g05095 827 CDD B_lectin 36 158 IPR001480 -
Seca4g05095 827 SUPERFAMILY Protein kinase-like (PK-like) 484 801 IPR011009 -
Seca4g05095 827 CDD STKc_IRAK 504 771 - -
Seca4g05095 827 SMART ntp_6 355 430 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05095 Seca-Chr4 95112593 95115076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05095 445 778 Receptor kinase-like Gene Family AT5G20050 40.921 7.29e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g05095 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05095 - - gmx:100305421 1350.11