Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05093 ATGATTGATGATGATTGGATGTTTGTGTTTGTGGTGATATCAGGTCGGTCGAAGCTGAAGACTAGGGACCTAGAATGGTACTTCTTCACGACGCTGGACAAGAAGTACGACAATGGTTCCAGGACCAACCGTGCCACTGAGAAAGGCTACTGGAAGACCACCGACAAGGATCGCACCATCAAGAACAGCGAATGCACCGTCGGAATGAAGAAAACCCTCGTTTACCACATAGGTCTAGCTCCACACGGAGATCGCACTAATTGGGTCATGCATGAATACAGGATGGTCGATGAGCAATTGGCCCAGGCTGGAGTATTGCAGGGAAACCCTTATTTGGTACACTCATTGCTCTTCTACAAAAATGGTAGACCGATCCTTGGAATAATTGATCAACCAGTTTTGAGAGAAAGATGGATTGGAGTAGCTGGAAAGAGAACTACACTGAATGGACAAGAAGTGTCCACACGCATTTGTGCAAACCTTTCTCAAGCTTACTTGTACACCACAAGTCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCTTCCGTGTCAGAAGCAAGGGCATTAAAGAGATATCGAATCGTGCCAATATTGGTGTGAAGATAATGGGGGAACTTGACTCTAGACCATTCCTCGAAGCTATGAAGAACAATTACAATGAGGAGGAAGCTAAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGGAGGAGTACTTGAAGGACCCGAATTGGCATCCCTTCAAAGTTGTCATGATTGAAGGGATGTAA 771 0.454 MIDDDWMFVFVVISGRSKLKTRDLEWYFFTTLDKKYDNGSRTNRATEKGYWKTTDKDRTIKNSECTVGMKKTLVYHIGLAPHGDRTNWVMHEYRMVDEQLAQAGVLQGNPYLVHSLLFYKNGRPILGIIDQPVLRERWIGVAGKRTTLNGQEVSTRICANLSQAYLYTTSPHLFSGDAEEAFFRVRSKGIKEISNRANIGVKIMGELDSRPFLEAMKNNYNEEEAKERASELCSLWEEYLKDPNWHPFKVVMIEGM. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05093 256 SUPERFAMILY Carbohydrate phosphatase 108 187 - -
Seca4g05093 256 Gene3D NAC domain 12 121 IPR036093 GO:0003677|GO:0006355
Seca4g05093 256 ProSiteProfiles NAC domain profile. 1 120 IPR003441 GO:0003677|GO:0006355
Seca4g05093 256 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 99 - -
Seca4g05093 256 Pfam XH domain 202 255 IPR005379 -
Seca4g05093 256 Pfam No apical meristem (NAM) protein 20 95 IPR003441 GO:0003677|GO:0006355
Seca4g05093 256 SUPERFAMILY NAC domain 19 112 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05093 Seca-Chr4 95026443 95028943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05093 13 138 NAC Transcription Factor Family AT5G04410 61.719 9.41e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g05093 Inositol_P 3.3e-05 CL0171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05093 - - aprc:113871167 159.458