Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05092 ATGGTTAGAACCCCTCGCTGCGACAAAAGTGGACTGAAGAAAGGAACATGGACTCCAGAGGAAGACCGAAAGTTAATTGCTTACGTTACTAGGTACGGCCACTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTGCTAGGTGTGGAAAGAGCTGCAGATTGAGGTGGCTGAATTATTTAAGGCCAGGCATCAAAAGAGGCAACTATACTCGTGAAGAAGAAGACACCATTGTCAAACTGCACGCATTGCTTGGAAATAGATGGTCAACGATTGCTTCTCACTTACCTGGAAGATCAGACAACGAGATAAAAAACCACTGGAACGCCCATCTTAAGAAGCGGTTTCAAGTTCAACACAATTCAGTAACAATTGAAAAAGATGAAAACTCCAACTCAAAGGATCACTCCCCAGTTGAATCCAGCAACCAAGAGAAGGACTCTATGAAAATTGCTGGCCCTTTCCAAGAGACTTCTCCAGCTACTAATAATTACGAGACCCCTGATCATGCTTCTCCATCGTTGGATGATTTTTTCTTCACAACAACGGAGATTGCACCATTCATTAATAATGACGAGAATTTATCGGTTCTTGATGACTTTGCTAATTTAGATTTTGTGGACTCACACAATGATCCTATAAGTGCATATTCTTGGACAGAACTCAATGTGGCTGACATTTCCTACTTCCCAGGAGAATTACTGGCACCTTTCGTTACTGAACCCGAATCTTTCTATCCAACTTTTGATACACTGCTTTGGGGTATGTCTTAA 774 0.4238 MVRTPRCDKSGLKKGTWTPEEDRKLIAYVTRYGHWNWRQLPKFAGLARCGKSCRLRWLNYLRPGIKRGNYTREEEDTIVKLHALLGNRWSTIASHLPGRSDNEIKNHWNAHLKKRFQVQHNSVTIEKDENSNSKDHSPVESSNQEKDSMKIAGPFQETSPATNNYETPDHASPSLDDFFFTTTEIAPFINNDENLSVLDDFANLDFVDSHNDPISAYSWTELNVADISYFPGELLAPFVTEPESFYPTFDTLLWGMS. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05092 257 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g05092 257 CDD SANT 69 112 IPR001005 -
Seca4g05092 257 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca4g05092 257 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g05092 257 CDD SANT 16 61 IPR001005 -
Seca4g05092 257 MobiDBLite consensus disorder prediction 123 148 - -
Seca4g05092 257 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g05092 257 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca4g05092 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g05092 257 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 163 - -
Seca4g05092 257 SMART sant 13 63 IPR001005 -
Seca4g05092 257 SMART sant 66 114 IPR001005 -
Seca4g05092 257 Gene3D - 6 67 - -
Seca4g05092 257 Gene3D - 69 146 - -
Seca4g05092 257 FunFam MYB-related transcription factor 13 66 - -
Seca4g05092 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca4g05092 257 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05092 Seca-Chr4 94994200 94995347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05092 1 116 MYB Transcription Factor Family AT3G01140 71.552 1.17e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05092 Myb_DNA-binding 4.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05092 K09422 - gmx:106799185 295.434