Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05083 ATGGCGAGAACCCCTTCTTGTGACAAAAATGGACTGAGGAAGGGTACTTGGACTGCAGAAGAAGATAGGAAGTTAATTGCTTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTTCCCAGGTTTGCAGGTCTGCAGAGGTGTGGGAAAAGTTGCAGATTGAGGTGGATGAATTATCTAAGGCCAAATATCAAAAGAGGGAACTTCACTCAACAAGAAGAGGAATGTATCATCAGAATGCACAAAAAACTGGGCAATAGATGGTCTGCCATTGCGGCTGAATTACCTGGAAGAACAGATAATGAAGTAAAGAATCATTGGCATACCACACTCAAGAAGAGAGTTGCAAATGAGAAAGCCAACAAATCCTCCAAATCAAAAGCTATTGAATCCACTCAAGGGAGGGACTCAGTGACCAACAATGATGCTGTTCCTGTTTTTCAAGTTACTCTTCCAACTACTTCCCATATGTCAGAAATCACTGGTCCACTATCCCCATTTTCATCCTCCAGCGAGTTCTCTTCCGTAACTTCAGATCACACTTCTGCTGCCGGTAATGGAAATTTGTTGCTTGAAGATGATGACTTCAGTTTTCTGGATGCATATGCAGAGACTATGAATGGAAGTTTCTGGACAGAGTCATTATTAATGGCTGATATTTCATCCACTACACCAAGTGAAATAGTACCAGGGGATCTTACTTGTGCTATTCCAAATCCAGATACTGCTCAGATCTTTGATCCTTGTGTATTGTCTCCCAATCAATCGTCCAGTGAAAGCTTGGTTTTGGAGAATGACTTTGGCAACTTTCTGGATGCATGCACAGAACAGACAATTGATAAATTTTGGGGACAGCAATATGTGGCTGACATGTCCCACTCTCCAAGCGAACTGTTGTCACCATTGCCAACTGAATTTGATTATTGTTCTACGATATATGATGCAGACCTTTGGAGTCAAAGTAATTTGTATGATGGAAATCTTAGCTTATTCTAA 999 0.4154 MARTPSCDKNGLRKGTWTAEEDRKLIAYVTRYGCWNWRQLPRFAGLQRCGKSCRLRWMNYLRPNIKRGNFTQQEEECIIRMHKKLGNRWSAIAAELPGRTDNEVKNHWHTTLKKRVANEKANKSSKSKAIESTQGRDSVTNNDAVPVFQVTLPTTSHMSEITGPLSPFSSSSEFSSVTSDHTSAAGNGNLLLEDDDFSFLDAYAETMNGSFWTESLLMADISSTTPSEIVPGDLTCAIPNPDTAQIFDPCVLSPNQSSSESLVLENDFGNFLDACTEQTIDKFWGQQYVADMSHSPSELLSPLPTEFDYCSTIYDADLWSQSNLYDGNLSLF. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05083 332 FunFam MYB-related transcription factor 13 66 - -
Seca4g05083 332 CDD SANT 69 112 IPR001005 -
Seca4g05083 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca4g05083 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca4g05083 332 MobiDBLite consensus disorder prediction 117 140 - -
Seca4g05083 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca4g05083 332 CDD SANT 16 61 IPR001005 -
Seca4g05083 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 205 - -
Seca4g05083 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g05083 332 SMART sant 13 63 IPR001005 -
Seca4g05083 332 SMART sant 66 114 IPR001005 -
Seca4g05083 332 Gene3D - 69 141 - -
Seca4g05083 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g05083 332 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca4g05083 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g05083 332 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05083 Seca-Chr4 94857686 94859093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05083 1 216 MYB Transcription Factor Family AT2G31180 46.759 6.84e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05083 Myb_DNA-binding 7.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05083 K09422 - gmx:100777107 375.555