Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05082 ATGTGGGATTGGTTTTCAGGTCTGCAAAGGTGTGGGAAGAGTTGCAGATTGAGATGGTTGAATTATCTAAGGCCTAATATCAAAAGAGGGAACTTTACTCAACAAGAAGAGGAATGCATCATCAGAATGCACAAAAAACTGGGCAATAGATGGTCTGCCATTGCGGCTGAGTTGCCTGGAAGAACAGATAATGAAGTAAAGAACCATTGGCATACCACACTCAAGAAGAGAGTTGCAAATGAAAAAGTCAGCAAAGCCTCCAAATCAAAAGATATTGAATCCAAAAGTACCAACAATGATGCTGTTCCTGCTTTTCAAGTTACTCTTCCAACTACTTCCCATATGTCAGAAATCACTGGTCCATTATCTCCTCTATCATCCTCCAGCGAGTTTTCTACAATAACCTCAGATCACACTTCTGCTTCCAGTAATGGAAACTTGTTGCTTGAAGATGATGACTTCAGTTTTCTGGATGCATATATTGGAAGTTTCTGGACAGAGTCATTAATGGCTGATATTTCATCCACTAGTACACAAAGTGAAATAGTACCAGACTATACCAATTGTGCTCTTCAAAATCAAGATGATACCCAGAATAACCTTGATGGTAGTTTATTTTCACCGCACCAATCGTGCAGTGAAAGTTTGGTACTGGAGAATGAGTTTGGCAGTATTCTGGATACATGCACGGAGCCAACAATTGATAATTTTTGGGGACAGCAATATGTGGCCGACATTTGCCACGTTCAAAGTGAAATACTGACACCCTTTGTGGCTGAATCTGAATATTTTTCTACAGTATATGATGCTGAACTTTGGAGTCAAAATAATTTGTATAATCAACATGTTAGCTTATTCCAATGA 864 0.39 MWDWFSGLQRCGKSCRLRWLNYLRPNIKRGNFTQQEEECIIRMHKKLGNRWSAIAAELPGRTDNEVKNHWHTTLKKRVANEKVSKASKSKDIESKSTNNDAVPAFQVTLPTTSHMSEITGPLSPLSSSSEFSTITSDHTSASSNGNLLLEDDDFSFLDAYIGSFWTESLMADISSTSTQSEIVPDYTNCALQNQDDTQNNLDGSLFSPHQSCSESLVLENEFGSILDTCTEPTIDNFWGQQYVADICHVQSEILTPFVAESEYFSTVYDAELWSQNNLYNQHVSLFQ. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05082 287 CDD SANT 31 74 IPR001005 -
Seca4g05082 287 Gene3D - 6 28 - -
Seca4g05082 287 PANTHER MYB DOMAIN PROTEIN 55 7 193 - -
Seca4g05082 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Seca4g05082 287 Pfam Myb-like DNA-binding domain 29 73 IPR001005 -
Seca4g05082 287 SMART sant 28 76 IPR001005 -
Seca4g05082 287 Gene3D - 30 102 - -
Seca4g05082 287 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Seca4g05082 287 SUPERFAMILY Homeodomain-like 9 81 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05082 Seca-Chr4 94844064 94845634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05082 6 100 MYB Transcription Factor Family AT2G31180 63.918 1.94e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g05082 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05082 K09422 - gmx:100777107 301.982