Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05081 ATGGTAAGAGCTCCTTTCTATGACAAAAATGGAGTGAAGAAAGGAGCATGGAGTAGAGAAGAGGATGAGAGGTTAAGAGCTTATATTCAGAGACATGGTCTTACTAATTGGCGTCAACTCCCCAGGGTTGCAGGTTTAACAAGATGTGGCAAAAGTTGCAGACTCCGTTGGTTGAATTATCTGAGGCCAAATCTAAAACATGGGAACTACACTCCAGAGGAAGATGAAATAATCATCAAATTACACCGACAACTTGGAAATAATATTAGTATCTGA 276 0.3986 MVRAPFYDKNGVKKGAWSREEDERLRAYIQRHGLTNWRQLPRVAGLTRCGKSCRLRWLNYLRPNLKHGNYTPEEDEIIIKLHRQLGNNISI. 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05081 91 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g05081 91 SMART sant 13 63 IPR001005 -
Seca4g05081 91 SUPERFAMILY Homeodomain-like 15 89 IPR009057 -
Seca4g05081 91 FunFam Transcription factor RAX3 7 67 - -
Seca4g05081 91 PANTHER OS09G0431300 PROTEIN 1 91 - -
Seca4g05081 91 CDD SANT 16 61 IPR001005 -
Seca4g05081 91 Gene3D - 7 67 - -
Seca4g05081 91 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca4g05081 91 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05081 Seca-Chr4 94748939 94751217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05081 1 91 MYB Transcription Factor Family AT4G38620 64.835 3.72e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g05081 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05081 K09422 - gmx:100776043 163.696