Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05080 ATGGTGAGAGCTCCTTATTTTGATGAAAATGGAATAAAAAAAGGTGCATGGAGTGAGGAAGAGGATAAGAGACTTATAGCTTACATTGAGAAACACGGCCATCCTAATTGGCGTCAACTCCCAAAGTTTGCAGGTTTGGCTAGGTGTGGAAAGAGTTGCAGGCTTCGTTGGATGAATTACCTACGACCAAATCTAAAACATGGGAACTACACCCAAGAGGAAGAGCAAATAATCACGGAGTTGCATAAAAAGCATGGAAACAAATGGTCTCTGATTGCTGAAAATCTACCTGGCAGAACAGATAATGAGATAAAGAACTATTGGCACAGCAACCTAAAGAAGTTCTCACAGCAGAGCAATGAGATCACAACATCTGATGATGAATTCAAGTCCTCCAAGTGTGCAGATTTTGGAAAGCCATCATCATCAAGCGAGGCTGTTAGTGCTGATTCCCACCACATTTTGGAAAGTTCACTGTCCATGTCCTCGGAAGTGTCCTACACTGAACACAATTCCCCTTCCTTTTCCTCTAATCATTCGGATTCAAACGTGAACTTGTCCAGAGAAGAAGAGAGAGTTGCTTCATGGGAAACATGGGATGGATTCAGCAACAGTTTTTGGACTGAACCGTTTATTTCAGAAAACGCTTTTAGTCAGAATGATTACTTTCCCATTTCATGCTACGGAACAGAGGAAGAGGAACCATTTTTCATATGGTAG 720 0.4167 MVRAPYFDENGIKKGAWSEEEDKRLIAYIEKHGHPNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKHGNYTQEEEQIITELHKKHGNKWSLIAENLPGRTDNEIKNYWHSNLKKFSQQSNEITTSDDEFKSSKCADFGKPSSSSEAVSADSHHILESSLSMSSEVSYTEHNSPSFSSNHSDSNVNLSREEERVASWETWDGFSNSFWTEPFISENAFSQNDYFPISCYGTEEEEPFFIW. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05080 239 FunFam MYB-related transcription factor 13 66 - -
Seca4g05080 239 CDD SANT 69 112 IPR001005 -
Seca4g05080 239 Gene3D - 7 67 - -
Seca4g05080 239 SMART sant 13 63 IPR001005 -
Seca4g05080 239 SMART sant 66 114 IPR001005 -
Seca4g05080 239 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Seca4g05080 239 CDD SANT 16 61 IPR001005 -
Seca4g05080 239 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca4g05080 239 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Seca4g05080 239 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca4g05080 239 Gene3D - 68 136 - -
Seca4g05080 239 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca4g05080 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca4g05080 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca4g05080 239 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05080 Seca-Chr4 94716316 94717642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05080 1 114 MYB Transcription Factor Family AT5G16770 68.421 1.61e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05080 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05080 K09422 - gmx:100781032 358.607