Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05078 ATGAGTAATTTCTTCACAAACAACTCATCCATGGAGTTTGACCTTGAAAACCCTTTAGAAAACTTCCATGACCTTGACTGTGATGCTGTCTCTTCCCTCTTCCTCATTGAATCTGACCACATCCCACCACAAAATTACTTTCAAACCCTCAAAGCCAGAGATCTTGACATCTCTGCCAGAAGAGAAGTCATTTCTTTAATCTCACAGTTGTCTTGCACTTTGGATCCAGTTTTGTCTTACCTTGCTATCAACTATCTGGACCGGTTCCTGGCCAACCAAGGGTTATTGCAACCAAAGCCATGGGTCTTAAGGCTTCTTGCAGTCTCCTGCTTTTCTCTAGCTGCCAAGATGATGAGAACAGAGTACTCTGCCACAAATGTTCAGGCCCTTTTGGAACAAAGTAAAGGTGGCATCATCTTTGAGGCACAAACAATACAAAGAATGGAGGCACTTATCTTGGGAGCTCTACAATGGAGAATGCGATCAATCACCCCCTTCTCTTTCTTAACTTTCTTCATTAATTTGTTCAGTCTCAAAGACCCACACACGGGAAAGGTTCTGAAAAATCGAGCGTCTGAAATCATATTATTCAAGTCACAAAGAGAGATAAAGCTTTGGGAATTCAAGCCATCTATAATTGCTGCATCGGCACTTCTGTGTGCTTCTCACGAGTTGTTTCCTTTTCAATATCCGTGCTTCTTAAGAGCATTATCCGATTGTTCATACGTAAATAAAGAAAACATGCTGCAATGCTATAATGTGATACAGGATATAGCTATAGAGGAGCAGAATGAGTCTGTGTTGAATGCAGTTTCAAGTTCAGACACACCGGTTAATAATGTGTTGGACCATCATTTTCTGAGTTCAGAAAGTGAAATAACCAACGGGATCACCGTTGATGCTTCTTCTCCTCAGAGACAAGAGAAGTATATCAAAAGAAGGAAAATCACCGGATGCGGTAACAATCCAACGAACCAGAATTCTCGGATTAAACCATGCTGA 1002 0.4122 MSNFFTNNSSMEFDLENPLENFHDLDCDAVSSLFLIESDHIPPQNYFQTLKARDLDISARREVISLISQLSCTLDPVLSYLAINYLDRFLANQGLLQPKPWVLRLLAVSCFSLAAKMMRTEYSATNVQALLEQSKGGIIFEAQTIQRMEALILGALQWRMRSITPFSFLTFFINLFSLKDPHTGKVLKNRASEIILFKSQREIKLWEFKPSIIAASALLCASHELFPFQYPCFLRALSDCSYVNKENMLQCYNVIQDIAIEEQNESVLNAVSSSDTPVNNVLDHHFLSSESEITNGITVDASSPQRQEKYIKRRKITGCGNNPTNQNSRIKPC. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05078 333 Pfam Cyclin, N-terminal domain 35 160 IPR006671 -
Seca4g05078 333 SUPERFAMILY Cyclin-like 21 160 IPR036915 -
Seca4g05078 333 Gene3D - 43 161 - -
Seca4g05078 333 Gene3D - 32 253 - -
Seca4g05078 333 FunFam D6-type cyclin 43 157 - -
Seca4g05078 333 PANTHER CYCLINS 33 263 IPR039361 -
Seca4g05078 333 FunFam D6-type cyclin 158 253 - -
Seca4g05078 333 Pfam Cyclin, C-terminal domain 163 270 IPR004367 -
Seca4g05078 333 SUPERFAMILY Cyclin-like 145 281 IPR036915 -
Seca4g05078 333 SMART cyclin_7 61 154 IPR013763 -
Seca4g05078 333 SMART Cyclin_C_2 163 277 IPR004367 -
Seca4g05078 333 CDD CYCLIN_AtCycD-like_rpt2 163 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05078 Seca-Chr4 94618548 94620221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05078 11 314 Core Cell Cycle Gene Families AT4G03270 45.768 2.34e-78 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05078 K18812 - gmx:100820404 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05078 4 94618548 94620221 Seca4g05078 4 94618548 94620221 ECH
Seca4g05078 4 94618548 94620221 Seca4g05078 4 94618548 94620221 PCT