Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05060 ATGGACGAATACCATTGTAAAGCATACCCAAACATCGCTGCTGCCAATGGCTTTGCCATAGAAAATTCACTCTGCCCCGATGATCAATACTTCAATGTAGAGGTTGAATACACAAATATGTACGTTTTGAATGCCAGGGAATTCCACACTTTTTGTGATACAACGTATCACAGTTTCTTGAATATCTCAAAGTGTAAAATATTGCAAGAAGCAACAATAGTATCTTGGCTTTCCAATATGGGTGTGCCTAAGGATGCTTATAAGTTAGTGATGGACAACATCTTGGATTGTGCTCATGACATGACCAATAGGACTCATAAGCACAAAAAGATTCTATCAATGCGTGTGGATGTGATTATCACTCGGGCCAGTGAAGACGGAACTGATGAAGACGACGATGATTTTGAAGAAGAGGAGGATGAAGATCATGGGTTGGTGCCTGCGGCTAAATCATCGATTGAGGAATTGGAGATGGTGAAGGTTGAAGAACAAGAAGCGTCTGAGCAGGGGAGGTGTCCAATCTGTTTTGAAGATTTTCTTCTTGCTGTTCGTATGCCGTGTTTGCATATGTTTCATAGAAATTGCATCCATGGTTGGTTGCAAGTAGGCAATTCTTGCCCTTTGTGTCGGTTTCAGATGCCTACTAGTGAAAAGTGA 657 0.414 MDEYHCKAYPNIAAANGFAIENSLCPDDQYFNVEVEYTNMYVLNAREFHTFCDTTYHSFLNISKCKILQEATIVSWLSNMGVPKDAYKLVMDNILDCAHDMTNRTHKHKKILSMRVDVIITRASEDGTDEDDDDFEEEEDEDHGLVPAAKSSIEELEMVKVEEQEASEQGRCPICFEDFLLAVRMPCLHMFHRNCIHGWLQVGNSCPLCRFQMPTSEK. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05060 218 SMART ring_2 172 209 IPR001841 -
Seca4g05060 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 216 IPR013083 -
Seca4g05060 218 SUPERFAMILY RING/U-box 153 214 - -
Seca4g05060 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 214 - -
Seca4g05060 218 Pfam Ring finger domain 171 210 IPR001841 -
Seca4g05060 218 ProSiteProfiles Zinc finger RING-type profile. 172 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05060 Seca-Chr4 94391909 94392565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05060 125 218 C3H Transcription Factor Family AT5G01980 38.144 1.92e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05060 - - cam:101499491 254.218