Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05045 ATGACGGTTTCTTCCTTCTTCAACAGAGTATCCAGAGCTCTCAACAGCCACCATTACTACTCCAAACTTGTGCTTCTCTGCACTCTCAGTGGTGGAGGTGTGGTGGCATACTCTGAATTACAATCAGAAGCTGAACGCCCTAGTGTTGATGCTAATGAGCCCTTGAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGCTACCAGTTTCCTTAAGGGTCTAGATGCTTCATTATATGATGTTCAGGTTGTTTCGCCTCGTAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACTTGTGGGACAGTTGAAGCACGGAGCATTGTAGAGCCAGTCCGAAACATCATAAAAAAGAGAAAAGGAGAAATCAAATTTTGGGAGGCAGAATGTTTGAAGATTGATGCTGCAAACAAAAAAGTTTTTTGTCAATCCAATATTGACAACTTAGTGGGAAGTGGTGAATTTTCTCTAGACTATGACTTCTTGGTTATAGCAGTAGGAGCACAAGTAAACACTTTTAACACCCCCGGTGTCAAGGAGAACTGTCATTTTCTAAAGGATGTTGAGGATGCTCAGAAGATCAGACTGTCTGTGATAGATTGTTTTGAGAAAGCTGTTCTTCCTAGTCTATCTGAAGAAGAGCGAAGGTCAAATCTTCATTTTGTAATTGTCGGAGGAGGTCCAACTGGTGTTGAATTTGCTGCAGAGCTGCATGATTATGTCCAAGAAGATTTAATCAAATTATATCCAACCGTGAAAGATATAGTGAAGATAACATTGATTCAATCAGGAGATCACATCTTGAACATGTTTGATGAAAGAATAAGTTCATTTGCTGAGCAGAAGTTTACGAGAGATGGTATAGAAGTTCAAACAGGATGCCGAGTTGTCAATGTTAATGACAAGGAAATTACAGTGAAGGTGAAATCAACAGGAGAGGTTTGCTCTGTGCCCCATGGATTGATTGTTTGGTCGACTGGCATTGCAACTCTTCCAGTTATAAGGGACTTAATGGAAGAAATTGGTCAGGCTAAAAGGCATGTACTAGCAACGGATGAATGGTTGCGAGTGAAGGGATGCGGAGATGTATATGCTATTGGTGATTGTTCTACAATCATTCAACGTAAAATCATGGATGATATCTCAGATGTATTTAAGGCTGCAGACAAAAATAACTCTGGTACCTTGACTGTTGAAGAATTCAAGGATGTGATGGATGACATTATCTTAAGATACCCACAAGTTGAACACTATCTGAAGAGTAAACATCTACTTGATTTGAGCATAATGTGGAAAGATTCACAAGGGAATGAAAGAAAAGAAATAGACATAGAAGGATTTAAGCTGGGCCTTTCTCATGTAGATTCACAGATGAAGAGTCTACCAGCAACTGCACAGGTTGCTGCCCAGCAAGGTGCATATCTAGCTCAATGCTTTAATCGCATGGATCATTGTCAAGAGCATCCTGAAGGTCCTCGACGATTTACAGGATCTGGACGTCATAATTTTCTTCCCTTCCGGTATAAACATTTTGGGCAATTTGCTCCACTGGGTGGGGAGCAGGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCTATTGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGTGGTGGAGGTCTTGTAGCATATAGTGATGCAGGACCAGCTCAGAGTGATCAAAACAGGAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTTTGAAAAGCATGAAAAACTCCTCCTATGATATTCATGTAGTTTCACCACGCAACTATTTTGCATTCACTCCTTTGCTACCAAGTGTCACGTGTGGCACAGTGGAGGCACGGAGCATTGTTGAACCCATTCGCACTATCTCCCGAAAGAGTGGTGCAAATATTCAATTCAGTGAAGCTGAATGCTATAAGATTGATCCCAAGAACAATAAAGTTTACTGCCATGCTGCTCAAAACAAGAAGCTTGGTGGCTTAGAAGATTTTTCCATTGATTATGATTACTTGATCATAGCTATGGGAGCACGTCCTAATACATTCAACACACCTGGTGTTCACGAGCATGCCTACTTCTTGAAGGAAGTGGAAGATGGTCTAAGAATCCGGCGAGAAGTGATTAACCTCTTTGAAAGAGCTAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTCAGTTTTGTAATTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCAGAGCTTCATGATTTTGTACATGAGGATCTACATAAATTATATCCTTCCCTTGTAGAACATGTCAAGATTATTCTCCTTGAGGCAGGAGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAAAAAAAGTTCAAAAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAATGAAATCACTGCCAAAGAAAGAGGAACTGGTCAAGTTGTAAGTATTCCTCATGGAATGGTAGTTTGGTCAACTGGTGTTGGTGCTCGCCCTGAAATACTTGAATTTATGAAGCAGATTGGTCAGGTTAACAGGCGTGCATTAGTCACTGATGAATGGTTAAGGGTGGAAGGATGTGACAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAGCGTAAAGTTATGGAAGATATAGCTGTGATATTTAGCAAGGCAGACAAGAACAATTCAGGAAGGTTAGATCTTAAAGAATTTCATCACGTTGTTGATGACATTATTGAGAGGTACCCACAGGTGGATATTTATTTAAAGAAGAACCAAATGAAGGATATGGCCACCTTGCTAAACCAATCTCAGGAAACCTCTGCTATGGTTGACATTGAATACTTTAAAGAAGCTCTTTCCAAAGTAGATTCTCAGATGAAAAATCTCCCTGCAACAGCTCAGGTATGCACCTATCTTGCTGACTGTTTCAATCGGATGGAGTTGTGTGAGAGGTATCCTGAAGGCCCTCTCAGGTTTAGGGGAACAGGACGCCATCGGTTTCGCCCCTTCAGGTACAAGCATTTTGGACAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCCATTGGTCATAGCACACAGTGGCTCTGGTATTCTATATACACAAGCAAACTGGTCAGCTGGAGAACAAGGGCTTTGGTGGTATCTGACTGGACAAGGCGATTCATATTTGGTAGGGACTCAAGTCAAATCTGA 3261 0.4152 MTVSSFFNRVSRALNSHHYYSKLVLLCTLSGGGVVAYSELQSEAERPSVDANEPLKKKVVVLGTGWAATSFLKGLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECLKIDAANKKVFCQSNIDNLVGSGEFSLDYDFLVIAVGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCFEKAVLPSLSEEERRSNLHFVIVGGGPTGVEFAAELHDYVQEDLIKLYPTVKDIVKITLIQSGDHILNMFDERISSFAEQKFTRDGIEVQTGCRVVNVNDKEITVKVKSTGEVCSVPHGLIVWSTGIATLPVIRDLMEEIGQAKRHVLATDEWLRVKGCGDVYAIGDCSTIIQRKIMDDISDVFKAADKNNSGTLTVEEFKDVMDDIILRYPQVEHYLKSKHLLDLSIMWKDSQGNERKEIDIEGFKLGLSHVDSQMKSLPATAQVAAQQGAYLAQCFNRMDHCQEHPEGPRRFTGSGRHNFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASGGGLVAYSDAGPAQSDQNRKKKVVVLGTGWAGTSFLKSMKNSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRTISRKSGANIQFSEAECYKIDPKNNKVYCHAAQNKKLGGLEDFSIDYDYLIIAMGARPNTFNTPGVHEHAYFLKEVEDGLRIRREVINLFERASLPSLPVEEKKKLLSFVIVGGGPTGVEFAAELHDFVHEDLHKLYPSLVEHVKIILLEAGDHILNMFDKRITEFAEKKFKRDGIDVRLGSMVVKVGENEITAKERGTGQVVSIPHGMVVWSTGVGARPEILEFMKQIGQVNRRALVTDEWLRVEGCDNIYALGDCATINQRKVMEDIAVIFSKADKNNSGRLDLKEFHHVVDDIIERYPQVDIYLKKNQMKDMATLLNQSQETSAMVDIEYFKEALSKVDSQMKNLPATAQVCTYLADCFNRMELCERYPEGPLRFRGTGRHRFRPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSIYTSKLVSWRTRALVVSDWTRRFIFGRDSSQI. 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05045 1086 Gene3D - 444 551 - -
Seca4g05045 1086 Gene3D - 561 918 - -
Seca4g05045 1086 Gene3D - 937 1085 - -
Seca4g05045 1086 Gene3D - 47 407 - -
Seca4g05045 1086 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 561 921 - -
Seca4g05045 1086 Pfam EF hand 385 407 IPR002048 GO:0005509
Seca4g05045 1086 Pfam EF hand 900 920 IPR002048 GO:0005509
Seca4g05045 1086 PANTHER NADH DEHYDROGENASE 562 1086 IPR045024 GO:0003954|GO:0006116
Seca4g05045 1086 PRINTS FAD-dependent pyridine nucleotide reductase signature 675 693 - -
Seca4g05045 1086 PRINTS FAD-dependent pyridine nucleotide reductase signature 736 754 - -
Seca4g05045 1086 PRINTS FAD-dependent pyridine nucleotide reductase signature 572 591 - -
Seca4g05045 1086 PRINTS FAD-dependent pyridine nucleotide reductase signature 864 886 - -
Seca4g05045 1086 ProSiteProfiles EF-hand calcium-binding domain profile. 892 927 IPR002048 GO:0005509
Seca4g05045 1086 Pfam Pyridine nucleotide-disulphide oxidoreductase 570 894 IPR023753 GO:0016491
Seca4g05045 1086 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Seca4g05045 1086 SUPERFAMILY FAD/NAD(P)-binding domain 569 788 IPR036188 -
Seca4g05045 1086 SUPERFAMILY EF-hand 377 959 IPR011992 -
Seca4g05045 1086 ProSitePatterns EF-hand calcium-binding domain. 905 917 IPR018247 -
Seca4g05045 1086 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 48 407 - -
Seca4g05045 1086 SUPERFAMILY FAD/NAD(P)-binding domain 217 375 IPR036188 -
Seca4g05045 1086 SUPERFAMILY FAD/NAD(P)-binding domain 56 274 IPR036188 -
Seca4g05045 1086 SUPERFAMILY FAD/NAD(P)-binding domain 729 889 IPR036188 -
Seca4g05045 1086 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 375 IPR023753 GO:0016491
Seca4g05045 1086 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Seca4g05045 1086 SMART efh_1 896 924 IPR002048 GO:0005509
Seca4g05045 1086 SMART efh_1 382 410 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05045 Seca-Chr4 93973326 93986662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05045 5 549 Chloroplast and Mitochondria Gene Families AT4G21490 62.909 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05045 K03885 - gmx:100793566 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05045 4 93973326 93986662 Seca4g05045 4 93973326 93986662 ECH