Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05042 ATGGAGGATCCACACAACTACAAGGATGATGAGCTAGTCTTAGGACACCGACTTTCTCAATCAGCAAATAGTCATATGGAACCTAAATTTCAGAATTTTACATCTGAGAGACAGGGTGATTCAATTTCTATTCCAATGAACAGTATATGTTGTCATGGGAATGACACCAATATTTTGGGATACTGTAATTCTTTATTGAATGAAAGAAGAACAGTTACAGAGGCAAATGGCAATGTTAATAGCTATTTTCAGCAAAATCAAGGTGCGAGTAGGTGGGAAAGGTCAGGGAAGTTTTCTTCTGTAAATGGAGGAAACAGGAATGGTTGGTTAGGTGACAAAAATTCTGTTAAAAATGGCCACTTATCTGGGGTGGTGGGAATGCGATATGATTCTTATAGTACAACCTGCCCAAGACATTGTGATCACAGAGCAAATCAAGCAACCAACTCTAAAATTTTGCATTTAGTTAATCCTCAGTTCCATAACATTCATAATGGGGATGCTAAAAGCTTGGTTACAAGAATATCCTCATTTCTATGCTTGCATATTCCTGGAGTCATAAGCCCTCATGCTGAAGCTGTACAGCAGTGGAACAGATTTTTTGTCATTGCTTGTTTAGTGGCAATTTTTGTTGATCCGTTGTTTTTCTTCATGCTATCAGCAATAAAGGACAGTAAATGCATAGTTATTGATTCAGCCACTAGTCCCACTACAATAGCAATTGTAATTTTTAGAAGCATGACCGATGTTATATACTTCTTGCACATACTTCTCCAGTTTAGGTTGGCTTTTGTGGCTCCTGAGTCTAGAGTGGTTGGTGCAGGAGAGGTGGTTGAACATCCAAAAAAAATTGCACTCAATTACCTTAGTGGCTACTTTCTCATTGATATATTTAATGTAATGCCAGTTCCTCAGATTATATTATTTATCCTACCAAAATTCTTTGGATCTTTTGGAGCTGGAGCTAATACTGAAAAAAATATCTTACGGGTTTCTATTCTTATTCAATACCTTCCCAGACTGTGTAGGTTTCTTACTTTGATTGCTAGGCAGACTCCAAGTGGATTCATTTTTGAGTCAGCGTGGGGAAATTTCATTATCAATCTTCTAATTTATATGTTGTCTGCCCATGTTGTGGGTTCATGCTGGTATCTCTTTGGGTTACAGAGAGTTAACCAATGCCTTCGAGATGCTTGCCATAGCTCCAACTTTGAGTCATGCATGAGGTTCATAGATTGTGGGAATGGGAATGCTAGAGACAGTTTCCTTGTTGATCCAATGTGGAGTATATGGATAAATGATGCCAATGGTAGTGCTTGTTTTCAGAAAGATGGTTTCCCATATGGAATTTATTCTGAAGCTGTTGGTCTTACCACTATAAATGATAGACCGTTTACTAAAAAATATGTCTATTCATTGTTTTGGGGATTCCAGCAAATCAGCACTCTAGCTGGAAATCTAGTTCCAAGCAACTTCATTTGGGAGGTTCTTTTCACCATGGCTATTATTGGGCTAGGCCTTTTGCTCTTTGCTCTCCTCATAGGAAATATGCAGAACTTTCTTCAGGCTCTTGGACAGAGGAGATTGGAAATGTCATTAAGACAACGGGATTATGAGCAGTGGATGAGCCATCGATGCTTGCCAGAAGAACTAAGAAGGCAAGTGAGGAATGCTGAACGGTACAACTGGGTTGCCACCAGAGGGGTAAATGAAGAAATGCTTTTGGAGAATCTGCCTGAAGAACTTCAAAGAGATATAAGACGCCATCTCTTCAAATTTGTGAAGAAGGTTCGGATATTTTCCATGATGGATGATCAAGTCATTGATGCTATTTGTGAGAGACTAAAGCTGAAGATATTCATTGAAGAAAGCAAAATTCTGTATCCTGGTGGTCCAATTGACAAGATGATTTTTATTATACGAGGAAAAGTGGAGAGCATTGAAGATAAAACCACAATTTGCTTATCTGAGGGGGATTTTTGTGGCGAGGAACTTCTCACATGGTGCCTAGAGCATTATTCAGTAAATAGAAGTACAGTCTCTAATGGGAGAAAAGTAAGGATTACAGGACAGAGACTGCTAAGCAACAGAACAGTTAGATGCTTAACTAATGTGGAAGCATTTGTACTTCAAGTTTCAGATCTTGAAGGGGTCACTAGTCTTTATGCTAGATTTTTGCGGAATCAACATGTTCAAGGAGCTATCAGGTATGAATCACCCTACTGGAGGGCTTTTGCAGCAAGATGCATTCAAGTAACATGGAGATACAACAGGAAACGTCGACAACGGGAACATGCTGAAACTATTGATAAAAGTTCGGTCAAGCACCAGACTTATCAAATACTAGTCCATTTGAGTTTATATCCAAGTTATATTCCTAATAGGACTAACATACTTTTATAA 2403 0.3862 MEDPHNYKDDELVLGHRLSQSANSHMEPKFQNFTSERQGDSISIPMNSICCHGNDTNILGYCNSLLNERRTVTEANGNVNSYFQQNQGASRWERSGKFSSVNGGNRNGWLGDKNSVKNGHLSGVVGMRYDSYSTTCPRHCDHRANQATNSKILHLVNPQFHNIHNGDAKSLVTRISSFLCLHIPGVISPHAEAVQQWNRFFVIACLVAIFVDPLFFFMLSAIKDSKCIVIDSATSPTTIAIVIFRSMTDVIYFLHILLQFRLAFVAPESRVVGAGEVVEHPKKIALNYLSGYFLIDIFNVMPVPQIILFILPKFFGSFGAGANTEKNILRVSILIQYLPRLCRFLTLIARQTPSGFIFESAWGNFIINLLIYMLSAHVVGSCWYLFGLQRVNQCLRDACHSSNFESCMRFIDCGNGNARDSFLVDPMWSIWINDANGSACFQKDGFPYGIYSEAVGLTTINDRPFTKKYVYSLFWGFQQISTLAGNLVPSNFIWEVLFTMAIIGLGLLLFALLIGNMQNFLQALGQRRLEMSLRQRDYEQWMSHRCLPEELRRQVRNAERYNWVATRGVNEEMLLENLPEELQRDIRRHLFKFVKKVRIFSMMDDQVIDAICERLKLKIFIEESKILYPGGPIDKMIFIIRGKVESIEDKTTICLSEGDFCGEELLTWCLEHYSVNRSTVSNGRKVRITGQRLLSNRTVRCLTNVEAFVLQVSDLEGVTSLYARFLRNQHVQGAIRYESPYWRAFAARCIQVTWRYNRKRRQREHAETIDKSSVKHQTYQILVHLSLYPSYIPNRTNILL. 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05042 800 SUPERFAMILY cAMP-binding domain-like 527 726 IPR018490 -
Seca4g05042 800 ProSiteProfiles cAMP/cGMP binding motif profile. 599 666 IPR000595 -
Seca4g05042 800 Gene3D Jelly Rolls 597 724 IPR014710 -
Seca4g05042 800 CDD CAP_ED 599 716 IPR000595 -
Seca4g05042 800 Gene3D - 193 520 - -
Seca4g05042 800 SUPERFAMILY Voltage-gated potassium channels 194 527 - -
Seca4g05042 800 Gene3D Helix hairpin bin 521 591 - -
Seca4g05042 800 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 163 766 - -
Seca4g05042 800 Pfam Ion transport protein 197 527 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05042 Seca-Chr4 93905285 93914827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05042 5 680 Ion Channels AT3G17700 53.170 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05042 K05391 - jre:109012085 902.508