Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05020 ATGGGTTGGAAGAGATCTGGTTTGGAGTACAAGAGAGTTAAGATCTATGGACAAGTTCTATTCGGATTTTTGTTGATCTGCACAATTCAGATTTCAAGTGCACTCACTGATCCCACTGATGTTGCTGCAATTAATAGCTTATATGCTGCACTGGGATCCCCTGTTCTCCCTGGGTGGGTTCCTAGTGGCGGAGATCCATGCGGACAAGGGTGGCAAGGCGTTCAATGTAATGGTTCATTCATACAAAAAATAGTTCTGAATGGTGCAAATTTGGGAGGAGAACTGGGTGATAATCTGGCAACATTTGTTTCCATCACAGTAATTGAGCTAAGCAACAACAACATCGGAGGAAGTATTCCGTCCAATTTGCCAGTTTCCTTGAAAAACTTTTTTCTTTCAGGCAACCAGTTCACTGGAAGTATTCCGGCCTCTTTATCCACTCTAACTGGACTAACAGACATGTCTCTTAATGAAAATCATTTATCTGGAGAAATACCAGATGCATTTCAGTCACTTACACAATTGATCAATCTAGATTTATCTAATAATAATTTGAGTGGGGAATTGCCTCCTTCGGTGGAGAATTTATCAGCTCTGACCGCCCTACACATACAGAACAATCAACTGTCTGGGACACTAGATGTTTTACAAGACCTTCCTCTGAAAGATTTGAATATTGAGAACAATCAGTTTGCTGGCCCAATACCTCCAAAGTTGCTAAGCATCCCTAATTTCAGACAAGCTGGAAACCCTTTTAATAATAATGCTACTGCAACTCATGCTCCTCCACCTCGCTCTCCAGTGACAGCACCAGCACCGCCAGGAACACCAGTTTCTGGGGTACCATCTTCTGGCCATGTACCTACTAAACAGGCTGATGGACCAACAGTAACAAATGAATCAAATTCTGGGAAATCCAATAAAAACACCAAAAGGGTGGTTTGGATATCTATTGCTAGTGTATTGGGATTCATTATTTTGGTACTAGCACTCATACTATTTGTTCCAAGATGTGGCAGAAGGGAACATGTTGACAGAAGGTCCAAGCGACATCAAATTGGTGCATATGGAGGTGAAAGACAAAATGCTAGGGATTATGGGGCTATAGTCCAACCGCCTATACCAATAGGGGAGGTTTCAAGGCCTAAAGAGGATAATCAAGCAGAGGCCAGGAGAGTGTGGGCTATTCCAAATCGACAGGGTGAGCGAGAGAAGGATGTGCAAAGAATGGCACCTACACCAAAGAGGGGAGATCATGAGATCGATATGAGTACCCTAGAAGTGTACTCAATGCCTCCTCCTCCTCCACCTCCTCCTCCTCCGCCGCCTCCTCCTCCACCCCCACCCCCTCCTCCACCTCCTACTCAGAGTGTGATCGCTGAGCCAGTCACTTTCCACAGAGGGACTAATGTCAGTCCATCCAGAAGTTCAGTTCCTCCTCCCACTTTTGCAAAAGCTTTCACCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTGGGAAGCGTGTATAGGGCAGAGCTTCCTAATGGGAAGCTACTTGCTGTAAAGAAACTGGACAAGAGAGCCTCTGATCACCAGAAGGATGATGAGTTTCTTGAATTGGTAAATGCTATTGACAGAATACGACATGCTAATGTTGTTGAGCTAATTGGATACTGTTCAGAGCATGGTCAAAGGCTTCTGATCTATGAGTACTGCAGTAATGGGTCACTGTATGATGCACTCCACTCTGATGATGAAATCAGAACAAGACTCTCATGGAATACTCGCATACGGATAGCACTTGGGGCAGCTAGAGCCTTAGATTCTTATTGTCCTTTAACAAGATATTTGCATGAGCTATGTCATCCGCCTGTGATACATAGAAATTTGAAGTCTGCAAATATTCTCCTTGATGATGATCTATCTGTGCGTGTATCTGATTGTGGTTTAGCTCCATTGATAGCTTCGGGATCTGTAAGTCAGCTCTCTGGGAACCTGCTAACAGCTTATGGCTATGGAGCTCCAGAATTTGAGTCAGGAATTTACACATACCAAAGTGATGTATACAGCTTTGGAGTGATTATGCTAGAGCTTTTGACTGGCCGTCAGTCCCTTGACAGGACACGTCCCCGAGGGGAGCAATTTCTTGTCAGATGGGCAATTCCCCAACTTCATGATATTGATGCATTATCAAGCATGGTTGATCCTTCTTTAAATGGAGATTACCCTGCAAAATCATTGTCAAATTTTGCAGACATTATTTCTCGATGCCTTCAGTCGGAGCCAGAATTTAGGCCAGCAATGTCAGAAGTCGTTCTATACTTGCTAAATATGATAAAGAGGGAGTCTCAGCAAAGTGAATAA 2379 0.4359 MGWKRSGLEYKRVKIYGQVLFGFLLICTIQISSALTDPTDVAAINSLYAALGSPVLPGWVPSGGDPCGQGWQGVQCNGSFIQKIVLNGANLGGELGDNLATFVSITVIELSNNNIGGSIPSNLPVSLKNFFLSGNQFTGSIPASLSTLTGLTDMSLNENHLSGEIPDAFQSLTQLINLDLSNNNLSGELPPSVENLSALTALHIQNNQLSGTLDVLQDLPLKDLNIENNQFAGPIPPKLLSIPNFRQAGNPFNNNATATHAPPPRSPVTAPAPPGTPVSGVPSSGHVPTKQADGPTVTNESNSGKSNKNTKRVVWISIASVLGFIILVLALILFVPRCGRREHVDRRSKRHQIGAYGGERQNARDYGAIVQPPIPIGEVSRPKEDNQAEARRVWAIPNRQGEREKDVQRMAPTPKRGDHEIDMSTLEVYSMPPPPPPPPPPPPPPPPPPPPPPPTQSVIAEPVTFHRGTNVSPSRSSVPPPTFAKAFTIASLQQYTNSFSQENLIGGGMLGSVYRAELPNGKLLAVKKLDKRASDHQKDDEFLELVNAIDRIRHANVVELIGYCSEHGQRLLIYEYCSNGSLYDALHSDDEIRTRLSWNTRIRIALGAARALDSYCPLTRYLHELCHPPVIHRNLKSANILLDDDLSVRVSDCGLAPLIASGSVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELLTGRQSLDRTRPRGEQFLVRWAIPQLHDIDALSSMVDPSLNGDYPAKSLSNFADIISRCLQSEPEFRPAMSEVVLYLLNMIKRESQQSE. 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05020 792 Gene3D Ribonuclease Inhibitor 35 261 IPR032675 -
Seca4g05020 792 Gene3D Transferase(Phosphotransferase) domain 1 577 792 - -
Seca4g05020 792 SUPERFAMILY Formin homology 2 domain (FH2 domain) 444 453 - -
Seca4g05020 792 ProSiteProfiles Protein kinase domain profile. 499 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05020 792 MobiDBLite consensus disorder prediction 243 307 - -
Seca4g05020 792 MobiDBLite consensus disorder prediction 429 458 - -
Seca4g05020 792 MobiDBLite consensus disorder prediction 282 307 - -
Seca4g05020 792 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Seca4g05020 792 SUPERFAMILY L domain-like 36 244 - -
Seca4g05020 792 MobiDBLite consensus disorder prediction 264 278 - -
Seca4g05020 792 Pfam Protein tyrosine and serine/threonine kinase 502 778 IPR001245 GO:0004672|GO:0006468
Seca4g05020 792 MobiDBLite consensus disorder prediction 246 262 - -
Seca4g05020 792 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 264 - -
Seca4g05020 792 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Seca4g05020 792 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 466 576 - -
Seca4g05020 792 MobiDBLite consensus disorder prediction 373 459 - -
Seca4g05020 792 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 577 792 - -
Seca4g05020 792 SUPERFAMILY Protein kinase-like (PK-like) 472 780 IPR011009 -
Seca4g05020 792 Gene3D Phosphorylase Kinase; domain 1 468 576 - -
Seca4g05020 792 MobiDBLite consensus disorder prediction 382 423 - -
Seca4g05020 792 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 81 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05020 Seca-Chr4 93632304 93640245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05020 31 791 Strubbelig Receptor Gene Family AT4G03390 61.868 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca4g05020 PK_Tyr_Ser-Thr 3.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05020 - - mtr:25492087 1127.08