Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05012 ATGGGTTGTTGTGTCTCAACAAGCAGTAGAAGTACTTGTAGCAGCAGGAGCAATGGAGAAGTGGTCTCTCCATCTTGCTTAGAAATTGGATTCTGTGGGCAAAAGAGGACAAGAAGAACATTCTCTGATCATGTTATTTCTTTGCACCATTTACCATCCTTACCCAGCAGAATTTTCACTAATGGAAAGAGCCGGTCTTCGTGCATATTCACGCAGCAAGGCCGCAAGGGTATTAATCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCTGAAGATATGATCTTTTGTGGTGTCTTTGATGGCCATGGTCCACATGGTCATCTTGTTGCACGCAAAGTGAGGGATACATTGCCAGTGAAACTACTTTCATTTTTGCATTCTGGTGAATCGAAGCGAACAGGGTCAGGTAAAGCTTGCTTCAAAGGGAATGTAAAACCTGACAGCGGAGACTCTGAGGATTGCTCTGCTGAGGAGAAATTGAATTCTAAATGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGACAAAGAGCTCAGGTCTCATCCAAATCTGGATTGCTTCTGTAGCGGGAGCACAGCTGTGTCAATAGTGAAGCAGGGTTCAAACTTGTTCATGGGCAATATTGGGGATTCTCGAGCAATCATGGGATCCAAGGACAGCAATGACACCATGGTGGCAGTTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATTAAGCGTTGCAAGGGTAGGGTATTTGCCCTGCAAGATGAGCCAGAAGTGCCTAGGGTATGGTTGCCTTTTGATGATGCTCCAGGATTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGATTGCTTACAGACAAAGATCAATTCATTGTTCTTGCCTCAGACGGGGTCTGGGATGTTTTAAGCAATGAGGAAGTGGTTGAGATAGTATCTTCAGCACCAACAAGATCATCAGCAGCTAGGATTCTGGTAGATTCTGCTGCTAGAGAGTGGAAACTTAAATACCCAACTTCAAAGATGGATGACTGTGCTGTAGTTTGCTTATTTTTGGATGGGAAAATGGACTCAGAATCTGATAATGAGGAACAAGGCTTTTCTTCTGCAACCATCCAGAGCAACCATTCAGGTAATCCAATTGAGTCAGATGATGGACAAAAATCTGAGCCATCTTTGCAAAGGAACTTCACTGTGAGATCCTCAGAAGAAAATGAGACAACTAATGGAGGAGCTCTATCTGTTGATGTTGAAGATGGAACATCATCAGCTGATGATCAAAACTGGTCAGGTTTGGAAGGTGTCACCCGTGTAAACTCACTCGTCCAACTTCCTAGATTTTCTGAGGAAAGACCAAACTCTTGA 1416 0.4364 MGCCVSTSSRSTCSSRSNGEVVSPSCLEIGFCGQKRTRRTFSDHVISLHHLPSLPSRIFTNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDMIFCGVFDGHGPHGHLVARKVRDTLPVKLLSFLHSGESKRTGSGKACFKGNVKPDSGDSEDCSAEEKLNSKWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVSIVKQGSNLFMGNIGDSRAIMGSKDSNDTMVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDNEEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETTNGGALSVDVEDGTSSADDQNWSGLEGVTRVNSLVQLPRFSEERPNS. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05012 471 MobiDBLite consensus disorder prediction 377 450 - -
Seca4g05012 471 FunFam probable protein phosphatase 2C 52 57 372 - -
Seca4g05012 471 CDD PP2Cc 65 369 IPR001932 -
Seca4g05012 471 MobiDBLite consensus disorder prediction 380 450 - -
Seca4g05012 471 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g05012 471 SUPERFAMILY PP2C-like 57 371 IPR036457 -
Seca4g05012 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 369 IPR001932 -
Seca4g05012 471 SMART PP2C_4 55 367 IPR001932 -
Seca4g05012 471 Pfam Protein phosphatase 2C 96 346 IPR001932 -
Seca4g05012 471 PANTHER PROTEIN PHOSPHATASE 65 367 IPR015655 GO:0004722|GO:0006470
Seca4g05012 471 Gene3D - 58 371 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05012 Seca-Chr4 93486396 93491380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05012 1 471 PP2C-type Phosphatase Gene Family AT1G03590 69.602 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05012 - - gmx:100798340 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05012 4 93486396 93491380 Seca4g05012 4 93486396 93491380 ECH
Seca4g05012 4 93486396 93491380 Seca4g05012 4 93486396 93491380 PCT