Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05000 ATGTTCGTATCCATTCCCAACGCTGATGCTATTTACATGAAGTGGATTCTACATGACTGGAGTGATGAACACTGCATAAAGATTTTAAAGAACTGTAGGAAGGCAATACCAGAGAAAACGGGAAAGGTGATAATCGTGGATCATGTTCTAGATCCGGAAGGGAATGAACCATTTACTGACGCTGGTATTGCGTTCGATATGTTGCTGCTTGCACACAACGCAGGTGGGAAGGAAAGGACTGCGGAGAATTGGAAAATTCTATTCAAAGATGCAGGATTCGCGCGTTATAACATCATCAAGATCAATGCAATGCCATCCATTATTGAAGCATTTCCAATCTAA 342 0.4152 MFVSIPNADAIYMKWILHDWSDEHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGNEPFTDAGIAFDMLLLAHNAGGKERTAENWKILFKDAGFARYNIIKINAMPSIIEAFPI. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05000 113 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 110 IPR029063 -
Seca4g05000 113 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 112 IPR016461 GO:0008168
Seca4g05000 113 PANTHER O-METHYLTRANSFERASE 1 95 IPR016461 GO:0008168
Seca4g05000 113 Pfam O-methyltransferase domain 1 94 IPR001077 GO:0008171
Seca4g05000 113 Gene3D Vaccinia Virus protein VP39 1 113 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05000 Seca-Chr4 93295743 93296818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05000 1 109 Monolignol Biosynthesis Gene Families AT1G77520 48.649 5.88e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05000 K22588 - gmx:100812768 217.238