Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04998 ATGGCTGATAGGCGCGAGCTCATCCTAAACAAAAGAAAGGCTCCCAATATGCTTTCTTCCACATCGAGTAGTTCTCCTTGCTATCGTGGGTTTTCCCTTTTGTTTTCAGTTTTGTTTAGTCTCTGTTCTCACGTTGCAACCTCTCGATCAAGGATTGAAGTGCTCCCTGGCTTTCAAGGGCCCCTTCCCTTCGAGCTTGAAACAGGGTACGTGGGATTAGGAGAAACAGGGGATGATCTGCAGGTGTTCTACTACTTTATTAAGTCAGAGAACAATCCTGAAAAAGACCCTCTCATGCTTTGGTTAAGTGGTGGTCCTGGATGCTCTTCATTTTCGGGTCTCGTCTATCAAATTGGTCCAATTGCATTTGAAATTAAGGATTACAACTGGAGCTTGCCTAATTTGGTCTTGAGGCAACAATCATGGACAAAGGTATCTAGTATTATTTTCGTAGATTTGCCATTTGGAACTGGCTTCTCTTATGCGAAAAATGTCCGTGCGCAACGAGGAGACTGGAAATTAGTTCACCATACTCACCAATTTCTCAGGAAGTGGCTGGTTGATCATTCAGAATTTCTTTCAAACAAATTGTTCATTGGAGGTGATTCATACACTGGCATTCCTCTACCCGCCATTGGTGTCGAAATCTCTAATGGAAATGAAAAAGGTCTCAAACCGTGGATAAATCTCCAGGGATATCTGCTAGGGAACCCTATAACAACTAGAAGAGAAAAAAATGAGCAAATTCCATTTGCCCATGGAATGGGACTTATCTCTGATGAACACTATGCGTCACTACAGAGAAATTGTAAAGGAGAGTATGTAGATATAGATTCCACAAATGAATTGTGTTTAAGCGATCTCAATTACTTTGATGCGTGCCTTTCAAAAATAAATATGCAAGATATTTTGGATCCCTATTGCTTTAAAGGTTCACCTATGCAACATGAACCTCTACAGAGAAGATCTCTAACTCAAAAGTTGAAGGCCTCTTTTAGTCCTAATCTCAAAGACAATATTGCGTTTGTTTGCGATACTTTTGCTGATTTTGTCTGCGCTAAATGGATGAATGATGAGAGTGTTCGAAAAGCATTGCATGTTCGAGAGGGAACAACAGGGCAGTGGGAACGTTGTTACAAAGTTGATTATGACTTTGAAATCTTTAGCAGTTTCGAGTTTCATGTACATCTTAGTGCTAAAGGCTACCCTTCCTTGATATATAGTGGGGATCATGACTTACTTGCTCCTTTCTTGTCGACGCAAGCATGGATAAGGGCTCTAAACTACTCCATTGTGCATGATTGGAGGTCATGGCATGTTAATAACCAAGTTGCAGGATACACAAGGACTTACTCAAATCAAATGACATTTGCAACTGTGAAGGGTGCAGGACATATAGCTTCTAAGTACAAGAGTGATGAATGTTTAGCCATGTTCACTAGATGGATATCTAATGAGCCTTTGTGA 1467 0.407 MADRRELILNKRKAPNMLSSTSSSSPCYRGFSLLFSVLFSLCSHVATSRSRIEVLPGFQGPLPFELETGYVGLGETGDDLQVFYYFIKSENNPEKDPLMLWLSGGPGCSSFSGLVYQIGPIAFEIKDYNWSLPNLVLRQQSWTKVSSIIFVDLPFGTGFSYAKNVRAQRGDWKLVHHTHQFLRKWLVDHSEFLSNKLFIGGDSYTGIPLPAIGVEISNGNEKGLKPWINLQGYLLGNPITTRREKNEQIPFAHGMGLISDEHYASLQRNCKGEYVDIDSTNELCLSDLNYFDACLSKINMQDILDPYCFKGSPMQHEPLQRRSLTQKLKASFSPNLKDNIAFVCDTFADFVCAKWMNDESVRKALHVREGTTGQWERCYKVDYDFEIFSSFEFHVHLSAKGYPSLIYSGDHDLLAPFLSTQAWIRALNYSIVHDWRSWHVNNQVAGYTRTYSNQMTFATVKGAGHIASKYKSDECLAMFTRWISNEPL. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04998 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 210 IPR001563 GO:0004185|GO:0006508
Seca4g04998 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 161 IPR001563 GO:0004185|GO:0006508
Seca4g04998 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 150 IPR001563 GO:0004185|GO:0006508
Seca4g04998 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Seca4g04998 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 53 471 IPR001563 GO:0004185|GO:0006508
Seca4g04998 488 FunFam Carboxypeptidase 343 488 - -
Seca4g04998 488 Gene3D alpha/beta hydrolase 45 316 IPR029058 -
Seca4g04998 488 Pfam Serine carboxypeptidase 56 485 IPR001563 GO:0004185|GO:0006508
Seca4g04998 488 Gene3D - 346 488 - -
Seca4g04998 488 SUPERFAMILY alpha/beta-Hydrolases 54 487 IPR029058 -
Seca4g04998 488 FunFam Serine carboxypeptidase-like 11 46 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04998 Seca-Chr4 93222270 93233163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04998 44 75 Calmodulin-binding Proteins AT2G22960 62.500 4.87e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04998 K16296 - gmx:100780069 671.003