Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04994 ATGGACACATCAAAGAAAAGTGGAAAATCCACCAAGGAGAGTGTTGATGACACTTCAAAGGTTACAGGTGGAAGTGAAAGTCAAGATTGGGAGATGGAGAAGGGAAAGGGTCTTGATTTCAGCTCAGGGAGGCGCCAATGGAAGCCAGTTTTTGATGACATTTCCATGTCAGATAGACCTCTCAAGAAGATTCGTAGTCCTGAACGCCAAAACCCAAATCAACCATCCTCTGTATTATCTCTGCAACCCCCTTCATCTAAAATACTCTTTCCTTTTGCTTTTGAAGCCTCTCAATCTCAACATTCAATGCCATTCCCACACCAACCTGCAACCACAAATTTGCCTCCTTTTCATCCACCTCTTCAGCCAACACAACAAATCCAGCACATGATATCTTTTGGGCCCCAGCAGAACATGGGGTACCCACCATTCTTAGCCCCAGATTCTTCTATACCACACCAACAGCAGCAACAGCTTCTTCAGTATTGGAGTGATGCACTGAATCTAAGTCCAAGAGGAAGGGTGTTAGGACCAGAAGGAAGACCAATGTTAAGGCCCCAAACACAGCCTTTGAATGCTACAAAGCTCTATAGGGGAGTGAGACAGCGCCATTGGGGCAAATGGGTTGCTGAGATTCGTCTTCCTCGCAATAGGACTCGTCTCTGGCTAGGCACATTTGATACTGCTGAAGATGCTGCTATGGCATATGATCGTGAGGCTTTTAAGCTGAGAGGAGAGAATGCTAAGCTCAATTTCCCTGAGCTTTTCCTTAACAAGGATAATGCAGCAGCATCCACAACAGCTCAAACTTCTTCTTCCCCACATGAAGGTTCAACATCAACATCAAGCCAGAACACAAAGCAACCTGAAGTTGAACTTGAACCAGTTCAAGAAGACCATAACAACAACATGCAGGCTCTCAATGATGAAAGCATGCAGCCACTAGCATCAATAACAGAAGAGAATGCTGAAACTGGGGAAGGCATTTCACAGTCTCAGGAATTGGTTTGGGGAGAAATGGCTGCTTGGTTCAATGCAATTCCTGCAGGTTGGGGACCAGGTAGCCCTATGTGGGATGATTTGGACCACAACAATAATCTTCTTTTGCAGTCACAGTTTCCTTTTCTGAATCCAAATCAGCAAGAATTTCATGATGGTAATGCTGCTCAGAGACAAGAAGAAGATAACACAGGACCAGGTTCTTCCTCTTCCACTTGTCCCACCAGGCCTTTCTTCTGGAAGGGTCAAGATTGA 1254 0.4522 MDTSKKSGKSTKESVDDTSKVTGGSESQDWEMEKGKGLDFSSGRRQWKPVFDDISMSDRPLKKIRSPERQNPNQPSSVLSLQPPSSKILFPFAFEASQSQHSMPFPHQPATTNLPPFHPPLQPTQQIQHMISFGPQQNMGYPPFLAPDSSIPHQQQQQLLQYWSDALNLSPRGRVLGPEGRPMLRPQTQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDNAAASTTAQTSSSPHEGSTSTSSQNTKQPEVELEPVQEDHNNNMQALNDESMQPLASITEENAETGEGISQSQELVWGEMAAWFNAIPAGWGPGSPMWDDLDHNNNLLLQSQFPFLNPNQQEFHDGNAAQRQEEDNTGPGSSSSTCPTRPFFWKGQD. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04994 417 Pfam AP2 domain 197 245 IPR001471 GO:0003700|GO:0006355
Seca4g04994 417 MobiDBLite consensus disorder prediction 51 66 - -
Seca4g04994 417 SUPERFAMILY DNA-binding domain 196 254 IPR016177 GO:0003677
Seca4g04994 417 PRINTS Ethylene responsive element binding protein signature 219 235 IPR001471 GO:0003700|GO:0006355
Seca4g04994 417 PRINTS Ethylene responsive element binding protein signature 197 208 IPR001471 GO:0003700|GO:0006355
Seca4g04994 417 CDD AP2 195 255 IPR001471 GO:0003700|GO:0006355
Seca4g04994 417 MobiDBLite consensus disorder prediction 263 295 - -
Seca4g04994 417 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 20 361 - -
Seca4g04994 417 ProSiteProfiles AP2/ERF domain profile. 196 253 IPR001471 GO:0003700|GO:0006355
Seca4g04994 417 MobiDBLite consensus disorder prediction 1 83 - -
Seca4g04994 417 MobiDBLite consensus disorder prediction 377 411 - -
Seca4g04994 417 SMART rav1_2 196 259 IPR001471 GO:0003700|GO:0006355
Seca4g04994 417 FunFam Ethylene-responsive transcription factor 2 195 254 - -
Seca4g04994 417 MobiDBLite consensus disorder prediction 67 83 - -
Seca4g04994 417 MobiDBLite consensus disorder prediction 263 291 - -
Seca4g04994 417 MobiDBLite consensus disorder prediction 27 41 - -
Seca4g04994 417 Gene3D AP2/ERF domain 196 254 IPR036955 GO:0003700|GO:0006355
Seca4g04994 417 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g04994 417 MobiDBLite consensus disorder prediction 377 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04994 Seca-Chr4 93123769 93125052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04994 1 367 AP2-EREBP Transcription Factor Family AT2G20880 42.784 7.64e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g04994 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04994 - - gmx:100811328 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04994 4 93123769 93125052 Seca4g04994 4 93123769 93125052 ECH