Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04988 ATGGCCTTAGATCAGTACTTGGAGGAGACTGCATCCCAAATTGATTCCTTCCAAGAAAAACCATCTTTGGAGAAGTGGAAATCCTCCAGTAATGTCATTGCAGATTCTGATAAAAAAGCCTCTAGTGGCTTTGATTGCAACATCTGTCTGGACTGTGTGCAAGATCCAGTTGTGACTCTTTGTGGCCATCTTTACTGCTGGCCCTGCATTTACAAATGGCTTCATTCCCGTAGTGTAACTTCAGAAGATGAGGAGCAGCAAAAGCCTCAATGTCCAGTATGCAAATCAGAAGTTTCTCAATCATCTCTAGTTCCATTATATGGCCGTGGACAGACCACAATAGCTTCTGAAGGGAAGTCCCATCAAGTAGGGTCTGTTATACCACAAAGACCCCGGGGTCCCAGATCATATAATTCTACAATTGTTTCCCAACCTACTTCTCAAAGTTATAATCCTTATCATCCTCAACAATTCAACTCAGTTCCAAACAGTTACACCTCACCAATGCTTAGCACAAGTGGTGGTTCACTACATAACACATTTGGCATCTTTGGTGAGATGATATATGCAGGGGTCTTTGGTAACCAGGTTGCAAACATATATACATATAATCTTTCAGGTAACAACAGTAACCCAAGGATCAGAAGGCATTTTATGCAAGTTGATAAATCACTCAACAGAATCTGTTTTTTCCTCCTTTGCTGCCTTATTTCGTGTCTTCTCTTATTCTGA 732 0.4112 MALDQYLEETASQIDSFQEKPSLEKWKSSSNVIADSDKKASSGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLHSRSVTSEDEEQQKPQCPVCKSEVSQSSLVPLYGRGQTTIASEGKSHQVGSVIPQRPRGPRSYNSTIVSQPTSQSYNPYHPQQFNSVPNSYTSPMLSTSGGSLHNTFGIFGEMIYAGVFGNQVANIYTYNLSGNNSNPRIRRHFMQVDKSLNRICFFLLCCLISCLLLF. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04988 243 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Seca4g04988 243 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 108 - -
Seca4g04988 243 SMART ring_2 46 94 IPR001841 -
Seca4g04988 243 MobiDBLite consensus disorder prediction 116 137 - -
Seca4g04988 243 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Seca4g04988 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 241 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca4g04988 243 SUPERFAMILY RING/U-box 31 101 - -
Seca4g04988 243 CDD RING-HC_AtRMA-like 44 96 - -
Seca4g04988 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 124 IPR013083 -
Seca4g04988 243 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04988 Seca-Chr4 92937122 92940492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04988 40 243 C3H Transcription Factor Family AT4G28270 40.670 6.05e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04988 K10666 - gmx:100807729 330.102