Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04978 ATGCAGCGCCACCGTGGCTCCACCGTGTCGAATCTGAGCCTCTTCTACCTCAGCTTGGCCTTGAAGCTCGTGCTGCTGTTCACCGCGGAGGGACAACCTGAGCACCATTCCCTCGACCTACATTGGTTTCCCGGCACCGCCACCTGGTACGGAGATCCCGAAGGCGATGGCAGCACCGGTGGGGCATGTGGGTATGGTACGTTGGTGGACGTGAAGCCGTTGAGGGCGCGGGTAGGAGCGGTGGGACCATTGCTGTTCATGAATGGTGAAGGGTGCGGTGCGTGCTATAAGGTGAAGTGCTTAGACAAGAGCATATGTACAAGACGAGCCGTTACGGTCATAATCACGGATGAGTGCCCTGGCTGCCCTTCTGACCAAACCCACTTCGATCTCAGTGGTGCTGCATTTGGCCGCATGGCTATCTCTGGAGAGAACTCTCAGCTCAGGGACCGTGGTCAAATCCCAGTCATTTACCGAAGAACTCCATGTAAATATCCGGGAAGAAAAATTGCCTTCCATGTTAACGAAGGTTCCACACCATTTTGGTTATCACTTCTGGTTGAGTTTGAGGACGCCGAGGGAGATATCAGCTCCATGCATATACGAGAAGCTGGGTCTAGTGAGTGGCTGCAGATGAATCATCTGTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGGGGACCGTTCTCTGTGAAACTGAGCTCCTCAACTGGGAGGAGCCTCTCTGCCAGAGATGTTATTCCGAGCAATTGGGTTCCAAAGGCCACTTACACTTCTCGCCTAAATTTCTACCCTTAG 804 0.5336 MQRHRGSTVSNLSLFYLSLALKLVLLFTAEGQPEHHSLDLHWFPGTATWYGDPEGDGSTGGACGYGTLVDVKPLRARVGAVGPLLFMNGEGCGACYKVKCLDKSICTRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAISGENSQLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDISSMHIREAGSSEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSTGRSLSARDVIPSNWVPKATYTSRLNFYP. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04978 267 Gene3D - 28 163 IPR036908 -
Seca4g04978 267 Pfam Lytic transglycolase 83 157 IPR009009 -
Seca4g04978 267 SUPERFAMILY Barwin-like endoglucanases 41 167 IPR036908 -
Seca4g04978 267 Pfam Expansin C-terminal domain 170 250 IPR007117 -
Seca4g04978 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Seca4g04978 267 SMART dpbb_1 78 158 IPR007112 -
Seca4g04978 267 FunFam Beta-expansin 3 165 266 - -
Seca4g04978 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Seca4g04978 267 FunFam Expansin B3 28 164 - -
Seca4g04978 267 SUPERFAMILY PHL pollen allergen 168 261 IPR036749 -
Seca4g04978 267 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Seca4g04978 267 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Seca4g04978 267 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Seca4g04978 267 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Seca4g04978 267 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Seca4g04978 267 PANTHER EXPANSIN-B3 24 265 - -
Seca4g04978 267 CDD DPBB_EXPB_N 42 163 - -
Seca4g04978 267 Gene3D - 164 262 IPR036749 -
Seca4g04978 267 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Seca4g04978 267 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Seca4g04978 267 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Seca4g04978 267 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Seca4g04978 267 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Seca4g04978 267 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04978 Seca-Chr4 92782402 92785130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04978 14 203 Expansin Gene Family AT4G28250 70.000 6.67e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04978 K20628 - gmx:100804525 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04978 4 92782402 92785130 Seca4g04978 4 92782402 92785130 ECH