Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04975 ATGCTGCCGAGGGCGTTGTTGGCCAAGTTCATTCATAAACCCTCCACTGTTTCTCTTTTCCAATTCAATCAACAGAGAGAAATGCATAGCAGGAACAAGAAAGCCATGGAGTTCATTGCAAAAGGCTGGAGTGCTTTGAAGGAGGTTGATAGAGTCATTGATTATTGTGAGCTCAATGATAAGCGCCTCATCCCTCTTCTTAGGACAGCAAAGGAGAATTTTGAGCTCGCTTTGGAGGCTGACAATACCAATACCCATGCTAGGTATTGGTTGTCCAGATTGCATATGAAATACCATGTTCCAGGAGCAAATAAAGCTGTAGGGGCAGCATTATTGGTAGAAGCAGCTGAAATGGATGATCCTGATGCACAGTATGCATTAGGCTGTCATTTAAGAGTTGAGAATGATTATGTCCAATCAGATCAACAAGCCTTTTATTATTTGGAGAAAGCTGTGGACCAGTTGCATCCAGGTGCTCTTTACCTTTTGGGTGCTGTATATTTGACTGGTGATTGTGTCAAGAAAGATATTGCTTCAGCATTGTGGTGTTTCCATAGGGCATCAGAGAAGGGCCATGCTGGGGCAGCTATAGCATATGGATCCCTTCTTCTTAAAGCTTACAAGGACCAAGAATGGAGAAAAGCCACTGCAACTTACGCCAATGACACAGAGGGATCTCTCATTACCGAAGGAGCTTGTGGTTATGGAGACCTCCACAAGGCTAGCTATGGGAAACACAGTGCTGGGTTAAGCACCATTTTGTTCAATAGAGGGAGCACTTGTGGGGCTTGCTATGAGATCAGATGTGTTGACCACATCTTGTGGTGTATACTTGGAAGCCCATCTGTGATTGTTACTGCTACAGATTTCTGTGCTCCAAATTATGGGCTTTCAGTTGATTATGGTGGTTGGTGTAACTTTCCAAGAGAACATTTTGAGTTGTCACAAGCTGCATTTGCTGAAATTGCCAAGGGAAAAGCTGATATAGTTCCAATTCAGTATAGAAGAGTAAAGTGTCAAAGAAGTGGTGGGTTGAAATTCACAATGAGTGGAAGTTCTCATTTCTATCAAGTCTTGATTACCAATGTGGGGCTGGATGGTGAAGTTGTTGCTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCCATGGCAAGGAATTGGGGGCAAAATTGGCATTGCAATGTCAACCTTCAACATCAGCCTCTGTCTTTTGAGGTAACAATTAGCAGTGGTAAAACACTCACATCTTACAATGTAGCCCCAGCAAAGTGGCAGTTTGGCCAGACATTTGAAGGGAAACAATTCTAG 1311 0.4325 MLPRALLAKFIHKPSTVSLFQFNQQREMHSRNKKAMEFIAKGWSALKEVDRVIDYCELNDKRLIPLLRTAKENFELALEADNTNTHARYWLSRLHMKYHVPGANKAVGAALLVEAAEMDDPDAQYALGCHLRVENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLKAYKDQEWRKATATYANDTEGSLITEGACGYGDLHKASYGKHSAGLSTILFNRGSTCGACYEIRCVDHILWCILGSPSVIVTATDFCAPNYGLSVDYGGWCNFPREHFELSQAAFAEIAKGKADIVPIQYRRVKCQRSGGLKFTMSGSSHFYQVLITNVGLDGEVVAVKVKGSRTGWIPMARNWGQNWHCNVNLQHQPLSFEVTISSGKTLTSYNVAPAKWQFGQTFEGKQF. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04975 436 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 354 433 IPR007117 -
Seca4g04975 436 Gene3D - 344 436 IPR036749 -
Seca4g04975 436 SMART sel1 121 156 IPR006597 -
Seca4g04975 436 SMART sel1 157 192 IPR006597 -
Seca4g04975 436 PRINTS Expansin/Lol pI family signature 211 226 IPR007118 GO:0005576
Seca4g04975 436 PRINTS Expansin/Lol pI family signature 251 269 IPR007118 GO:0005576
Seca4g04975 436 PRINTS Expansin/Lol pI family signature 381 395 IPR007118 GO:0005576
Seca4g04975 436 PRINTS Expansin/Lol pI family signature 229 247 IPR007118 GO:0005576
Seca4g04975 436 PRINTS Expansin/Lol pI family signature 419 433 IPR007118 GO:0005576
Seca4g04975 436 PRINTS Expansin/Lol pI family signature 327 343 IPR007118 GO:0005576
Seca4g04975 436 PANTHER OS02G0202600 PROTEIN 4 212 - -
Seca4g04975 436 PRINTS Expansin signature 343 355 IPR002963 GO:0009664
Seca4g04975 436 PRINTS Expansin signature 302 319 IPR002963 GO:0009664
Seca4g04975 436 PRINTS Expansin signature 390 411 IPR002963 GO:0009664
Seca4g04975 436 PRINTS Expansin signature 269 280 IPR002963 GO:0009664
Seca4g04975 436 PRINTS Expansin signature 355 376 IPR002963 GO:0009664
Seca4g04975 436 PRINTS Expansin signature 283 293 IPR002963 GO:0009664
Seca4g04975 436 PRINTS Expansin signature 319 332 IPR002963 GO:0009664
Seca4g04975 436 PRINTS Expansin signature 419 435 IPR002963 GO:0009664
Seca4g04975 436 PRINTS Expansin signature 242 256 IPR002963 GO:0009664
Seca4g04975 436 SUPERFAMILY Barwin-like endoglucanases 206 362 IPR036908 -
Seca4g04975 436 SMART dpbb_1 247 334 IPR007112 -
Seca4g04975 436 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 230 344 IPR007112 -
Seca4g04975 436 SUPERFAMILY HCP-like 69 211 - -
Seca4g04975 436 SUPERFAMILY PHL pollen allergen 341 433 IPR036749 -
Seca4g04975 436 Pfam Sel1 repeat 121 154 IPR006597 -
Seca4g04975 436 Pfam Sel1 repeat 158 192 IPR006597 -
Seca4g04975 436 Gene3D Tetratricopeptide repeat domain 23 155 IPR011990 GO:0005515
Seca4g04975 436 Pfam Lytic transglycolase 248 334 IPR009009 -
Seca4g04975 436 Gene3D - 199 340 IPR036908 -
Seca4g04975 436 Pfam Expansin C-terminal domain 346 422 IPR007117 -
Seca4g04975 436 CDD DPBB_EXPA_N 211 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04975 Seca-Chr4 92754995 92768267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04975 203 436 Expansin Gene Family AT4G38210 66.102 7.45e-118 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04975 - - lja:Lj0g3v0263569.1 847.04