Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04956 ATGGGTTGCATATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAAAGAGGATATCACAAAGAAATTGCAATCATGTAGCACAAGGCCTTCAGAGTTGAATGTTTTGAGATTGAATTCCAGCAAGAGGGTTGAGGGGGGTCGGGTGAAAGATACGCCATTAGGTGGAGGTGATGTGAAAGCTTCATTGATTGACAAGAAAGTCAATGGCTCAGTGCAATTGTATGTTGATCCAAATGGGAAGAAGAAAATAGAGAAGCCTGAATTGACTGTTATTGATCATCCTGGCCTTGGAAGGGTTCCAAAGGCTGCAGAAGGAGAGCAAGTTGCAGCAGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGGGAAGCTATCAAGGGATGGATACCACGGAGTGCAAATACTTTTGAGAGGTCACATAAAATTGGCCAAGGAACTTATAGTACTGTTTATAAGGCACGCGATGTGACCAATCAAAAGATTGTTGCATTGAAGAGGGTGCGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGACTCAACCATCCAAACATAATAAAGTTGGAGGGCTTGATAACTTCAGAGACGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGTATCAAATCCTAGCATTAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGATAACAATGGTGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTTTTTTGATCCCAGTCATAGTATTCCATTGACAAGCCGTGTTGTAACTCTGTGGTATAGACCACCTGAACTTCTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTATGGAGCTCTGGTTGCATACTGGGGGAACTATATACTGGGAGGCCCATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCGCCATCTGAGGACTATTGGCTTAAATTGCGGTTGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGGCGATGTGTTGCTGAAACATTTAAGGAATACCCATCTACTGCTATTAAGCTTATAGAGACCCTACTTTCAGTAGATCCAGCACATCGAGGGACAGCTGCTGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAACCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAGGAGATTGATGCTAAATTGCGGGATGAAGCAACCAGAAGGCAAGGAGCAGTTGGAGGCAGGGAGCAAAAAGTTGGCTCAGGAGTTAGGCAAGAAAAAGGACATAGGGCCTATGCCACCGCAAAAGACAATGCTGACCCAGGCATATCAATACAGCAAGGGCAACGTTATTCTAGCTCAAAGAACCGGAGTGAATTGTTCTACACTCATAGAGAACCTGTGTCTGGCCACAAACAGTCAGAAGATGTTAAAGAAATGGACAATTATTTCTCTGGGCATCTTTATAAGAAGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGGCTGGGCAAGGGCTGGGAAGGAAGTTGATGATGGGCCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACATTGTTGTCTGAAGACCAGGAGGAAAAACCAGTTCACTTGCACCACAGAAAACCAATTGAAGTAAGAAAATCCGTGGAGGCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATTGTTGATCTCGGTCAAATGGAAAATAGAAGGGTCCCCACTGAAAAGTCAACTCCGGATGGACATGGGTCCAGGGGAAACAAGATATACCTCTCTGGTCCTTTACTGGTTCAATCAAGCAACATGGATCAGATGCTCAAAGAGCATGATCGAAAGATCCAGGAGTTTTCAAGACGAGCAAGAATTGACAAGTCCAGAGCAAGAGGTGAGAAAGTCCGTGCACAGAGAAAGTAG 2088 0.4411 MGCICSKSSAVEDSKEDITKKLQSCSTRPSELNVLRLNSSKRVEGGRVKDTPLGGGDVKASLIDKKVNGSVQLYVDPNGKKKIEKPELTVIDHPGLGRVPKAAEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERSHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHVLRRLNHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLVSNPSIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPSHSIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSSGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVAETFKEYPSTAIKLIETLLSVDPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKLRDEATRRQGAVGGREQKVGSGVRQEKGHRAYATAKDNADPGISIQQGQRYSSSKNRSELFYTHREPVSGHKQSEDVKEMDNYFSGHLYKKPSHSGPLVPGSGWARAGKEVDDGPPVSNRVNLSKLSGLVASRTLLSEDQEEKPVHLHHRKPIEVRKSVEATNGSESRRRQDQKRIVDLGQMENRRVPTEKSTPDGHGSRGNKIYLSGPLLVQSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAQRK. 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04956 695 MobiDBLite consensus disorder prediction 672 695 - -
Seca4g04956 695 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04956 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Seca4g04956 695 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Seca4g04956 695 MobiDBLite consensus disorder prediction 672 688 - -
Seca4g04956 695 MobiDBLite consensus disorder prediction 601 640 - -
Seca4g04956 695 CDD STKc_CDK9_like 135 419 - -
Seca4g04956 695 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Seca4g04956 695 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Seca4g04956 695 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Seca4g04956 695 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04956 695 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04956 695 MobiDBLite consensus disorder prediction 450 472 - -
Seca4g04956 695 Gene3D Transferase(Phosphotransferase) domain 1 218 456 - -
Seca4g04956 695 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Seca4g04956 695 MobiDBLite consensus disorder prediction 601 651 - -
Seca4g04956 695 SUPERFAMILY Protein kinase-like (PK-like) 129 427 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04956 Seca-Chr4 92426743 92434079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04956 127 462 Core Cell Cycle Gene Families AT5G10270 48.580 6.13e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca4g04956 Pkinase 2.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04956 - - gmx:100807590 1172.53