Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04953 ATGGAACAGCCGGGAAGTAGTCAAGGTCCTTGTTCAAACAATAAGGTTGAAAGAAGACTGGTTGAGAAAAACAGAAGAAACCAGATGAAAATCCTCTACTCCAAACTCAACTCTCTTCTCCCTAACTACAACCCCAAGGAAGCACTGCCACTGCCTGACCAAGTGGATGAGGCCATAAACTACATAAAGAGCTTAGAGGAAAGGGTGAAGATTGCTCAACAGAAGAAAGACACCTTACTGCGAACCAATAACAATAAGAGATCCCGTGGTGGTGGTAGTAGTAGTAGTTGCAGCTCTGCCTTCCCACAACTTGAGATTCATGAAATGGGTTCCACTTTGGAAGTTGTTCTGACATGTGGTTCAGATAACCAGTTCGTTTTCCATGAAATCATTCGAATACTACATGAAGAGAACATTGAAATCAGGACTGCCAATTCCTCTATGGCTGCAGATCATTCCGTGCTTCATGTTCTGCATGCAGAGATTCCGCAATCTTCACTTCCATTTGGAGCGACCAAAGTGAGTGAGAGATTGAAAAGGTTTGTGAATGGATCCTCCAGCGATGTGGAAATACAGCCCGAATTGTGGGATTTTGAAATTCCTACTCATATATGGGGTTTCTAG 624 0.4327 MEQPGSSQGPCSNNKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKEALPLPDQVDEAINYIKSLEERVKIAQQKKDTLLRTNNNKRSRGGGSSSSCSSAFPQLEIHEMGSTLEVVLTCGSDNQFVFHEIIRILHEENIEIRTANSSMAADHSVLHVLHAEIPQSSLPFGATKVSERLKRFVNGSSSDVEIQPELWDFEIPTHIWGF. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04953 207 Gene3D - 8 91 IPR036638 GO:0046983
Seca4g04953 207 FunFam Transcription factor bHLH162 6 90 - -
Seca4g04953 207 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Seca4g04953 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 83 IPR036638 GO:0046983
Seca4g04953 207 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 182 - -
Seca4g04953 207 MobiDBLite consensus disorder prediction 76 97 - -
Seca4g04953 207 Coils Coil 55 82 - -
Seca4g04953 207 SMART finulus 19 71 IPR011598 GO:0046983
Seca4g04953 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04953 Seca-Chr4 92312168 92313192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04953 1 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.860 5.55e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g04953 HLH 7.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04953 - - gmx:100817883 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04953 4 92312168 92313192 Seca4g04953 4 92312168 92313192 ECH