Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04950 ATGTTCCATTGTAATCTTATTCTTCTTGTTCTCTTTTTTATGTCATTCCAATTCCAGCTATCTGTTAAATCTGATAGAATCTTCCCGGGCCAAACTCTGGCAGGTAACCACACTCTAATTTCCAAAGGTGGATTATTTGAAATGGGTTTCTTTGCACCACCGGGTAACTCTCACAACTTCTATATAGGAATATGGTACAAAGAGCCTCCACAGATAGAAAAAACAGTGGTATGGGTGGCCAACAGGGACCATCCTGTATCTGATCCATATTCTTCATGGTTGGCACTTGGTCACAATGGTAATCTAGTCCTACGCAACTCAGCTGGTCTCGCAGTTTGGTCAACAGGTTCTAACTCCAATGCATCTCCATTGAATTCAACAGTTGCTACCCTTGGTGATAATGGAAACTTAATTATAACAGGAAGATCAAATCCTATTTTGGATAAGGAAAAGAGAAAGATATGGCAGAGCTTTGACCACCCAACAGATACTTGGTTGCCTGGTGCAAATTTCGGGTATGATATGAATGCAGGTATGAAAATAAAAACAGTATTAACATCATGGAAAGATACAGGTGATCCAGCAACTAGTATCTTCTCTGCTGAGGTTTATCAAGTTCACCCTTATCAATCTCAGGTTCAGATGTTGATAAAGAATGGATCTGATGAGTATAAATTCTGGTTTGATAAAGATGGTATTAGTTTTGGATTTATATATGGTTGCAGTTCAAACTACTCAGTTAGTGACAATACGATTGTGTATTCGTTAGAAAGCCCCAGCTATTGTCTCCTGAGATATGTGCTGGACATAACGGGGCAATTGAAGCTGTTTATACGGTGGAATAATGATACTGAATCTGAAGGATGGCATTTGTTTTCAACACAACCACCACAAACGCATGAATCATATGGAGGGAATAAAAGGGGCAATACAACTGAAAATGTGGGAAAACTTGGAAAAAAGAATGCTACTTGGATTGTTGCTATAGTAGCATCAGCATTACTTGCTCTTTTGTTTGTTGGCCTTACTGTTTTACTGAGAATTGCAAGGAGGAAAGGCTCTGGCACTTCATTTGTGGCGCCGGGAGGGGATGCATTGAAGCAATACAAGCACCAAGATTTGCTGAGGGCAACCAAAAACTTCATACAGAAACTTGGGGAGGGAGGTTTTAGCACAGTTTACAAAGGGGAATTCTCAGACTCAACTTTCATAGCTGTGAAGGAACTTAAAGGCTCATTTCAAAAAGATAAACAGCTTAAAGCAGAACTCAACACAATCGGATTGATCCAGCACAGAAATCTTGTACGCCTACATGGCTTTTGTTTGGAACATTCTAAAAGATTCTTAGTCTATGATTACATGCCAAATGGTTCTCTAGAATCTCATCTATTCCAAAAGGGTTGTTATGATGTTTTAGATTGGGGAACAAGATATAATATTGCTCTTGGGACTGCCAGAGGTTTAGCTTACCTACATGAAGAGTGTAGAGACTGTATCATGCATTGTGATATCAAGCCAGAGAACATTTTGTTGGACGCTGAGTTTAATCCAAAAGTTGCTGATTTTGGCTTAGCAAAGCTTTTAAACAGAAATTTCAGCAGGGCTCTTACCACCATGAGAGGAACCAGAGGCTATCTTGCACCAGAGTGGTTTTCTGGTGGACCTGTCACTGCAAAAGTTGATGTGTATAGTTATGGACAGGTTCTTTTTGAGATCATTTCAGAAGGTGAGCTCAATATGGAAGAGCTAACTAGAGCATGCAAGGTTGCCTGCTGGTGCATTCAAGATCATGAGACAGACAGACCAACCATGACACAGGTGGTTCAAATTTTGGAAGGGCTTCTTGATGTAGGTATCCCTCCTATTCCACGGTTTTTCCAGTCCATTGCAGAAGTTCCCATGAATGAAAGTGATATCAAGCGAAGTGAGGCTTATAGTACTTCGAGTACACTACCAGCAAGTTTTACCTTTCAACCTTGA 1980 0.402 MFHCNLILLVLFFMSFQFQLSVKSDRIFPGQTLAGNHTLISKGGLFEMGFFAPPGNSHNFYIGIWYKEPPQIEKTVVWVANRDHPVSDPYSSWLALGHNGNLVLRNSAGLAVWSTGSNSNASPLNSTVATLGDNGNLIITGRSNPILDKEKRKIWQSFDHPTDTWLPGANFGYDMNAGMKIKTVLTSWKDTGDPATSIFSAEVYQVHPYQSQVQMLIKNGSDEYKFWFDKDGISFGFIYGCSSNYSVSDNTIVYSLESPSYCLLRYVLDITGQLKLFIRWNNDTESEGWHLFSTQPPQTHESYGGNKRGNTTENVGKLGKKNATWIVAIVASALLALLFVGLTVLLRIARRKGSGTSFVAPGGDALKQYKHQDLLRATKNFIQKLGEGGFSTVYKGEFSDSTFIAVKELKGSFQKDKQLKAELNTIGLIQHRNLVRLHGFCLEHSKRFLVYDYMPNGSLESHLFQKGCYDVLDWGTRYNIALGTARGLAYLHEECRDCIMHCDIKPENILLDAEFNPKVADFGLAKLLNRNFSRALTTMRGTRGYLAPEWFSGGPVTAKVDVYSYGQVLFEIISEGELNMEELTRACKVACWCIQDHETDRPTMTQVVQILEGLLDVGIPPIPRFFQSIAEVPMNESDIKRSEAYSTSSTLPASFTFQP. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04950 659 PANTHER OS07G0415500 PROTEIN 7 313 - -
Seca4g04950 659 CDD B_lectin 31 161 IPR001480 -
Seca4g04950 659 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Seca4g04950 659 ProSiteProfiles Protein kinase domain profile. 379 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04950 659 FunFam Protein kinase superfamily protein 454 527 - -
Seca4g04950 659 Gene3D Transferase(Phosphotransferase) domain 1 454 617 - -
Seca4g04950 659 Gene3D Phosphorylase Kinase; domain 1 348 453 - -
Seca4g04950 659 ProSiteProfiles Bulb-type lectin domain profile. 24 152 IPR001480 -
Seca4g04950 659 SMART blect_4 30 161 IPR001480 -
Seca4g04950 659 Pfam D-mannose binding lectin 75 189 IPR001480 -
Seca4g04950 659 FunFam S-receptor-like serine/threonine-protein kinase 350 453 - -
Seca4g04950 659 Pfam Protein kinase domain 382 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04950 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Seca4g04950 659 SUPERFAMILY Protein kinase-like (PK-like) 368 636 IPR011009 -
Seca4g04950 659 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 194 IPR036426 -
Seca4g04950 659 SMART serkin_6 379 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04950 659 Gene3D - 19 159 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04950 Seca-Chr4 92284331 92286643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04950 357 621 Receptor kinase-like Gene Family AT5G20050 37.421 1.33e-61 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g04950 Pkinase 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04950 - - ahf:112737678 703.745