Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04926 ATGTCGCTGCAGGCTCTGAAGGAATCTCTCAGACCCTGCACTACCCAACAATCACAACCACCTTCTTCATCTTCATCTTCAATTCTCCGCGCTTGCGATTCCCACTTCCCAATCACTAGAAAACCCCCTAAATCCTCTCTTTCCCACCAGCTTCTCCGTCTTCAAGACCCCCCGCTTCATCCCCATGATTCCATTAAGCCACAAAGGGACTCCAAAACCCAACAAGAAATACAACAAGAACGCGAACAAGAAGACGAAAAAGAAGAACCAGAGGTGAAGAGGGCCAAATTCGGTACAGAAAAATCGTCCCAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTGATATTGTCTTCACAAGGAGAAGTACCCATGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGTGGGAGTGAGGTTTCTGTATGGTTTGTACAAGAACAATCATGGAGGCATCCTCGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCCATTTTCGGTAAAGAAGGAGAGTCTATTCTAAGTGAAAACCGGGGAGAGAAAAGAGATCCTGTATTAATTATTTGCCCAACATCCGTTATTCACAACTGGGAGAATGAATTCTCTACGTGGGCTAACTTCAGTGTTTCCATTTATCACGGTGCAAACCGGGATCTGATATATGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACTTACAGGATTCATGGCAGTTCTTTGTCTGATATCAACTGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTCTAGAAATTAAAACCTTGAGACGCTATGGTCTTACTGGGACCATAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGAATTCTATGATGAACCCCTTAAGCATGGACAGAGATCAACTGCTCCAGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGCAGTTCTTCATAAATATTTGTTGAGAAGGACTAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATCTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGATATTCAATGCCTTATAAATAAGGACCTGCCATGTAGTTGTGGTAGCCCTCTTACTCAAGTTGAATGCTGTAAAAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTTCACAGAGACAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAGCAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCGAAAGATGACCCTGACAAACAAACTAAAGATGCAGAGTTTTCTGCTGCTGTCTTTGGCCCTGATATTGATTTCGTGGGTGGGAACATGCAGAATGAGAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTAATGTTCTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGTTCCACTCCGACTAATTTACGTCAGTCTCTGGTTGATGATTTCAATTCAAGTCCAAGTAAACAAGTATTCCTGATATCAACTCGTGCTGGGGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGGTTTGGACAGAAGCGGCATGTTTTGGTGTTCCGTCTTCTAGCAGCTGGTTCACTTGAAGAACTGGTTTATTCTCGTCAGGTATACAAGCAGCAACTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGA 2046 0.4257 MSLQALKESLRPCTTQQSQPPSSSSSSILRACDSHFPITRKPPKSSLSHQLLRLQDPPLHPHDSIKPQRDSKTQQEIQQEREQEDEKEEPEVKRAKFGTEKSSQFQFDHTGPFEPLILSSQGEVPMVQVPASINCRLLEHQRVGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKEGESILSENRGEKRDPVLIICPTSVIHNWENEFSTWANFSVSIYHGANRDLIYDKLEANGVEILITSFDTYRIHGSSLSDINWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQTKDAEFSAAVFGPDIDFVGGNMQNESFMGLSDVKHCGKMRALEKLMFSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLKHCCLWEDGKTIF. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04926 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 320 IPR014001 -
Seca4g04926 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 672 IPR027417 -
Seca4g04926 681 MobiDBLite consensus disorder prediction 1 32 - -
Seca4g04926 681 FunFam Switch 2 119 369 - -
Seca4g04926 681 CDD SF2_C_SNF 520 649 - -
Seca4g04926 681 MobiDBLite consensus disorder prediction 59 98 - -
Seca4g04926 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 370 IPR027417 -
Seca4g04926 681 MobiDBLite consensus disorder prediction 1 105 - -
Seca4g04926 681 Gene3D - 115 369 IPR038718 -
Seca4g04926 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 679 IPR001650 -
Seca4g04926 681 SMART ultradead3 133 328 IPR014001 -
Seca4g04926 681 SMART helicmild6 555 638 IPR001650 -
Seca4g04926 681 Gene3D - 382 679 IPR027417 -
Seca4g04926 681 PANTHER SNF2/RAD54 FAMILY MEMBER 32 673 - -
Seca4g04926 681 Pfam Helicase conserved C-terminal domain 526 638 IPR001650 -
Seca4g04926 681 Pfam SNF2-related domain 154 410 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04926 Seca-Chr4 91423627 91429959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04926 156 670 RAD5 or RAD16-like Gene Family AT5G05130 25.790 2.45e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g04926 SNF2_N 7.7e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04926 K20098 - gmx:100781003 1163.29