Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04920 ATGATACCAACCTATAGTTATTCAGTACTATCTTCTCCTATGCCGCCTTTAGATCTTAATGAAGATCACACTGATCACCAGTTCTTCAGTACAAACCATCAAGCCTCTTCTTCATCTTCTTATCTATCATATTCCATACTCTTCAACACGGATCAAGATCAAGGAGGATCTTACTATTGGGGACCAAAGCAGTTACAATGTGATGAAGAGGCCGAGAAGATTGTTCCTATTTCTATCACATCATGGGATCATCCAGCAGTTGAAAAGAATGGAAACAGCAGTGACGACCTGAAGAAAGAAGAAGGTGGGAAAGATCAAAATATTGAAGGTGAGGATATGAATTCAATGAAGTGGATGCCTTCAAAGATGAGAATCTTGCGGAGGATGATGCTATCCGATCAAACGGGTTCTTGTGATGAAAAGCAAAATTCATCACCACCTCTAGGAACAGCCAGCAACAACAATTCTTCAAACAATATCAATACTGGTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCCAAGCATGGTCGTGTTACAAAGAAGACAGATGTGTGGAGCCTTGGGATACTGATTTTGGAGTATCTAACAGGTAAGCTCCCTGCTAACTTTCTACCACAGGGTAAAGCAAGTGAGTTGAGTTTGGCAACTTGGCTGGAGTCAATTGTCCCTGAAAATTGGAGTAGTGACTGA 723 0.4232 MIPTYSYSVLSSPMPPLDLNEDHTDHQFFSTNHQASSSSSYLSYSILFNTDQDQGGSYYWGPKQLQCDEEAEKIVPISITSWDHPAVEKNGNSSDDLKKEEGGKDQNIEGEDMNSMKWMPSKMRILRRMMLSDQTGSCDEKQNSSPPLGTASNNNSSNNINTGRVCADCHTTKTPLWRTGPTGPKHGRVTKKTDVWSLGILILEYLTGKLPANFLPQGKASELSLATWLESIVPENWSSD. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04920 240 MobiDBLite consensus disorder prediction 133 160 - -
Seca4g04920 240 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 185 - -
Seca4g04920 240 ProSiteProfiles GATA-type zinc finger domain profile. 160 183 IPR000679 GO:0006355|GO:0043565
Seca4g04920 240 SMART GATA_3 160 200 IPR000679 GO:0006355|GO:0043565
Seca4g04920 240 MobiDBLite consensus disorder prediction 84 111 - -
Seca4g04920 240 SUPERFAMILY Protein kinase-like (PK-like) 186 212 IPR011009 -
Seca4g04920 240 MobiDBLite consensus disorder prediction 135 160 - -
Seca4g04920 240 Pfam GATA zinc finger 166 185 IPR000679 GO:0006355|GO:0043565
Seca4g04920 240 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 184 - -
Seca4g04920 240 Gene3D Transferase(Phosphotransferase) domain 1 113 240 - -
Seca4g04920 240 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04920 Seca-Chr4 91315554 91317030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04920 180 240 Receptor kinase-like Gene Family AT4G31250 50.820 3.10e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g04920 GATA 1.3e-06 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04920 - - gmx:100780875 190.66