Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04917 ATGCCTGCTCAGAAGCGTTCCTTCCCCGACTCTCTGCACGATCACCATCGCCATGCCAAGCAATCCAACGACGAACAACACCACCAACAAGATGAAGAAGATGATTATGATAAATCAGATGGTTCTGACCACCATACCCCAACTTCTGCCTCTGAAGAAAAGCCCGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGTATTATTAAGAAAACACGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCCATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACGCACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCCTAATTGCAGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGGCAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTGCATTTGTGACAATAGCACAGCGCAAACAACGAAATGTCCTTTCTAGGAGACAAAACCAAGTGAATGATACTCAAGGATCTGAAGATAATGAGGAGGAAACTGAGAATAATGAAAAGGACTCATCTTCTGCAGATGAGCGATGTACAGAGCTCAGGCAGAGAGCGCGGAAGAGGCGGACCAGAGCTCGCCCTTCTCAGCCCTCATCATCGACAGCAAGTCCCGATGGTGGATGCATAGAAAGTGATATGGATATAAGTAGAGAAAATAGAGGATTTTCTTCAAGGCAGGTGTCAAAACCTCAAAAACTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACAAGGCATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGTAGTGGTCGCCTGACTAAATTGGCTGATTATCTCCGTAACTTGGATGAAAACACCAACACTAATGAGTTAGATGTCCATCTCATGCTTTTTTCTTTGGACAAACAAAGTATCCCAAGTTTGCAGCATCCACACCTTAGCTGTCGGCCAACTTTGTCTGTGAAGCACCTTTGTGAATATGTTGCTTGTCAGATACCTTTGCCAGTTGATGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAATACATTTTGTGACAAGTCAGTTGATGAGACTCCTTCCTTTGATGAGCTAACAACACTGGTTATAGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGGATGAATCTTTGGCAGGGCTTAAGTCCAAATGCATATCTAAAAGGGGGCATTTAATTCTGGCATACAGGGGGAAGGAGTGA 1311 0.4409 MPAQKRSFPDSLHDHHRHAKQSNDEQHHQQDEEDDYDKSDGSDHHTPTSASEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEIQASIAKVVQRQSEALVKRRRDTPGAFVTIAQRKQRNVLSRRQNQVNDTQGSEDNEEETENNEKDSSSADERCTELRQRARKRRTRARPSQPSSSTASPDGGCIESDMDISRENRGFSSRQVSKPQKLTWGRGGFRSHTRHGSGNGSNSKSSRSGRLTKLADYLRNLDENTNTNELDVHLMLFSLDKQSIPSLQHPHLSCRPTLSVKHLCEYVACQIPLPVDEVEILAVKGCCNTFCDKSVDETPSFDELTTLVIDPSKDELETLQGDESLAGLKSKCISKRGHLILAYRGKE. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04917 436 SMART ring_2 71 110 IPR001841 -
Seca4g04917 436 Coils Coil 137 157 - -
Seca4g04917 436 MobiDBLite consensus disorder prediction 8 53 - -
Seca4g04917 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 140 IPR013083 -
Seca4g04917 436 PANTHER OS11G0578200 PROTEIN 14 435 IPR044592 -
Seca4g04917 436 ProSiteProfiles Zinc finger RING-type profile. 71 111 IPR001841 -
Seca4g04917 436 MobiDBLite consensus disorder prediction 283 298 - -
Seca4g04917 436 MobiDBLite consensus disorder prediction 181 298 - -
Seca4g04917 436 SUPERFAMILY RING/U-box 56 143 - -
Seca4g04917 436 MobiDBLite consensus disorder prediction 1 53 - -
Seca4g04917 436 Pfam Zinc finger, C3HC4 type (RING finger) 70 110 - -
Seca4g04917 436 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Seca4g04917 436 CDD RING-HC_RING1-like 68 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04917 Seca-Chr4 91252534 91260563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04917 69 234 C3H Transcription Factor Family AT2G30580 26.437 2.30e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04917 K10695 - gmx:100819311 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04917 4 91252534 91260563 Seca4g04917 4 91252534 91260563 ECH