Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04914 ATGAGCAGTGTCTATGAAGAGAAACAACGCAAACTTCACCCTTCCCACCAACTCCTCTCTCTCAAGAAATCCTTGAGAGACATTGACATTCCACCAAGGAAGCTCCTCATCCGCCGTGCAGCCACCGTCAATGACGGTGCTGGCGACATGTTTTCCGATGAAACTCTTTTGCAGAAATATCTTTCTCCCAACAGCAACACTTATGACTGCGATGATGGTATCGACCCTTATGCCTCCGACCACTTCCGAATGTTTGAGTTCAAGGTCCGGCGATGCACCCGGAGCCGGAGTCATGATTGGACAGACTGCCCCTTTGCTCACCCTGGTGAGAGAGCTCGCCGCCGTGATCCCCGCCAGTTTCACTACTCTGGTGCCATCTGCCCTGAGTTTCGCCACGGTGGTTGCAGCCGTGGTGATGGCTGTGAATTCTCCCATGGTGTTTTTGAGTGCTGGTTGCACCCTGCAAGGTACAGGACAGAACCCTGTAAAGATGGCACAAATTGCAAGAGAAAAGTTTGCTTTTTTGCACACACATATGAACAACTAAGGGTTTTGCCTCATGATGTGTCATCATGCAATGACAACAAGAGAAAGTGTTATTTGCTTTGTCGTCTTTGCCCTTCTTCTTCTTCTATTGGTTCCCCAACTTCTACTCTGTTTGGGGTGTCCCAATTTTCTTCTCCACCTTTGTCACCTTCTCCTTCTTCTTCTTCCCCTTCTTCCCGCAGTGCTCTTTCTAGGTTTGTGGAACATTATAACAATCACATTCTTCATCACAATAATCATGGTGTTGATTTGCTGAATGACCTTGTTTCCTCCTTGGAGGGTCTGAATTTTGGTGAGGCTTCACCTGTTTCTGCTTCCAAACCAGTGAATCTGCCTTGGCTTGAGGATCAGAAGAAGAAACAGTTGCAGTTTGTGCTTTCACCAACCATTAATTCTAATTCTGAGAGGTTTATTTCCAATGGGGAATGTTCAAGTGGCAAGTTGTTGAGGGAAGAGAGGAAGGTTGTTAATAATGATGATGTCACACCAGCAGCAGCTGCTCTGGATCTTGGATGGGTGAATGACTTGCTGAGGTAG 1083 0.47 MSSVYEEKQRKLHPSHQLLSLKKSLRDIDIPPRKLLIRRAATVNDGAGDMFSDETLLQKYLSPNSNTYDCDDGIDPYASDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGERARRRDPRQFHYSGAICPEFRHGGCSRGDGCEFSHGVFECWLHPARYRTEPCKDGTNCKRKVCFFAHTYEQLRVLPHDVSSCNDNKRKCYLLCRLCPSSSSIGSPTSTLFGVSQFSSPPLSPSPSSSSPSSRSALSRFVEHYNNHILHHNNHGVDLLNDLVSSLEGLNFGEASPVSASKPVNLPWLEDQKKKQLQFVLSPTINSNSERFISNGECSSGKLLREERKVVNNDDVTPAAAALDLGWVNDLLR. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04914 360 ProSiteProfiles Zinc finger C3H1-type profile. 122 148 IPR000571 GO:0046872
Seca4g04914 360 Gene3D - 117 193 - -
Seca4g04914 360 PANTHER UNKEMPT FAMILY MEMBER 54 359 IPR045234 -
Seca4g04914 360 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Seca4g04914 360 SMART c3hfinal6 121 147 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04914 Seca-Chr4 91212470 91213552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04914 69 241 C2H2 Transcription Factor Family AT5G12850 50.562 3.05e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g04914 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04914 K23047 - gmx:100820375 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04914 4 91212470 91213552 Seca4g04914 4 91212470 91213552 ECH