Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04911 ATGGTTGTGAAGGCGCCGAAGAATATGAGTATCAAGAACAAGAAGCCTTGCAATGCAAGCGAGATTCACTACAGGGGCGTGAGGAAGAGGCCTTGGGGTCGTTACGCTGCAGAGATAAGGGATCCCGGCAAGAAGAGCCGTGTTTGGCTGGGCACCTTTGACACCGCCGAGGAAGCCGCCAGGGCCTACGACGCCGCCGCACGACAGTTCCGTGGCCCTAAGGCAAAGACCAACTTCCCTTCTCCCTCGGAGGACAACAACATGAACAACGCTAACAGCAACAACCAGAGCCCCAGCCAGAGCAGCACCGTCGAGTCTTCCACGCCGGAGCGTGAGGTCACGCGCCGTTCCGCCGCCGTCATGGATCGCTTCCCGTTTCTCCCCCTGCAGCCGCAACTCATGGCGTTCGCCGGCGCCGGCGCCGGTGCCGGTGCCGTTGAAGGAATGGTGACTCCCGTGCGCCCTGTTTTCTTCCTCGACCCCGCTGCAAGGGCAGAGTTTCTGAGCCAGCGGTTTCCTGTCCGGTTCGAACCGGCACCGGTCGAGTTTAACGCCGGTTTTTGCGGTGGATCACAGAGTGATTCAGATTCATCCTCCGTCGTTGATTGTCAGCCGAAAAGAGCTCTCAATCTTGATCTTAACTTGGCTCCACCATCGGATGCTTAA 666 0.5871 MVVKAPKNMSIKNKKPCNASEIHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPSPSEDNNMNNANSNNQSPSQSSTVESSTPEREVTRRSAAVMDRFPFLPLQPQLMAFAGAGAGAGAVEGMVTPVRPVFFLDPAARAEFLSQRFPVRFEPAPVEFNAGFCGGSQSDSDSSSVVDCQPKRALNLDLNLAPPSDA. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04911 221 FunFam Ethylene-responsive transcription factor 2 23 81 - -
Seca4g04911 221 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Seca4g04911 221 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Seca4g04911 221 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Seca4g04911 221 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Seca4g04911 221 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Seca4g04911 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 169 - -
Seca4g04911 221 MobiDBLite consensus disorder prediction 79 108 - -
Seca4g04911 221 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Seca4g04911 221 MobiDBLite consensus disorder prediction 64 115 - -
Seca4g04911 221 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Seca4g04911 221 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04911 Seca-Chr4 91139057 91139722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04911 21 218 AP2-EREBP Transcription Factor Family AT5G44210 49.010 4.01e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g04911 AP2 8.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04911 K09286 - gmx:100775465 246.899