Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04900 ATGCTTGCGGTGTCACCTTTAAGCACAAAAGATGAAATCAAAGAAGAGACGGAGAGCTTTTCGATTGGAACTTCAACAACCGCTGATGTCATCGGTGACTTCGGTGACTTTTCCGACGGGAGTTTGTTGGAGAGCATCAACTTCGACGACCTCTTTGTCGGCATCAGCGTCGACGGTGATGTGTTGCCGGATTTGGAAATGGACCCGGAGATTTTCGCCGAGTTTTCCGTCAGCGGCGGCGAGGAATCGGAGATAAACTCATCGGCTTCGGTGGAAAATAACAATAACTGCAAAGGTGATGATGATAAAAGTTTGAAGAAAGATGACGAAGATAAAACGGCAACAACAGAAACGTCTTCTGCTTCGGGTCAAGGTTCGGGGTCAACGAGCCGAGGGGAAGAGATAGTGAGTAAAAGAGATGAATCGGCGGTGGTGAATCCGTCGCCAAAGGATGGTGGAAAAGGAAGAAAATCATCATCAGCTCAAGCAAAGAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACACCAGAATTGCATAGGCGATTTGTGCAAGCTGTGGAACAGTTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGTCATAACATTGCGAGCCACCTTCAAAAATATAGATCCCATAGAAAACATTTGTTGGCGCGTGAAGCTGAAGCAGCAAGCTGGAATCAAAAGAGACAACTGTATGGTGGAGGAGGGAAGAGAGAGGTGAGTCCATGGCTAGCACCAACCATGGGTTTCCCTCCAATGACTCCTACAATGCACCATTTTAGACCCTTACATGTATGGGGTCATCCTTCGATGGACCAGTCATTTATGCACATGTGGAATAAACATCTACCACATTCGCCGCCTCCGCCGCCGCTCTCATGGCCACCAGCGGCGGCTCCTCCTCCACCACCTCAAGACCCTTCTTTTTGGCACGGTCAGCACCAACGGACTCCAAACGCACTAATCCCAGGAACACCTTGTTTTCCACAACCTCTGACAACAGCAAGATTTGGATGTCCACCTGTCCCTGGCATCCCACCCCATGCCATGTACAAAGCAGATCACGGCATTGGCGTCCCTGGTCCCGGACCCTTCTCCGATTTCCATCCGTCAAAGGAGAGCATAGATGCAGCTATTGGAGATGTTTTATCAAAACCATGGCTGCCGCTGCCACTTGGACTTAAGGCTCCAGCACTTGAAAGTGTACTGGGTGAATTACAGAGACAAGGAGTTTCAAGCATTCCACCCTCTACTTGTGCTTGA 1305 0.4897 MLAVSPLSTKDEIKEETESFSIGTSTTADVIGDFGDFSDGSLLESINFDDLFVGISVDGDVLPDLEMDPEIFAEFSVSGGEESEINSSASVENNNNCKGDDDKSLKKDDEDKTATTETSSASGQGSGSTSRGEEIVSKRDESAVVNPSPKDGGKGRKSSSAQAKNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQKRQLYGGGGKREVSPWLAPTMGFPPMTPTMHHFRPLHVWGHPSMDQSFMHMWNKHLPHSPPPPPLSWPPAAAPPPPPQDPSFWHGQHQRTPNALIPGTPCFPQPLTTARFGCPPVPGIPPHAMYKADHGIGVPGPGPFSDFHPSKESIDAAIGDVLSKPWLPLPLGLKAPALESVLGELQRQGVSSIPPSTCA. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04900 434 Pfam Myb-like DNA-binding domain 174 223 IPR001005 -
Seca4g04900 434 MobiDBLite consensus disorder prediction 300 322 - -
Seca4g04900 434 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 433 IPR044825 GO:0003700|GO:0045893
Seca4g04900 434 FunFam Two-component response regulator 167 230 - -
Seca4g04900 434 MobiDBLite consensus disorder prediction 80 95 - -
Seca4g04900 434 NCBIfam myb-like DNA-binding domain, SHAQKYF class 171 225 IPR006447 GO:0003677
Seca4g04900 434 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g04900 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 227 IPR017930 -
Seca4g04900 434 MobiDBLite consensus disorder prediction 116 132 - -
Seca4g04900 434 SUPERFAMILY Homeodomain-like 169 228 IPR009057 -
Seca4g04900 434 MobiDBLite consensus disorder prediction 300 330 - -
Seca4g04900 434 MobiDBLite consensus disorder prediction 77 175 - -
Seca4g04900 434 Gene3D - 168 229 - -
Seca4g04900 434 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04900 Seca-Chr4 91020021 91024745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04900 1 327 G2-like Transcription Factor Family AT5G44190 42.651 6.71e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g04900 Myb_DNA-binding 5.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04900 - - aprc:113858121 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04900 4 91020021 91024745 Seca4g04900 4 91020021 91024745 ECH